View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_115 (Length: 295)

Name: NF1358_low_115
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_115
NF1358_low_115
[»] chr7 (2 HSPs)
chr7 (58-225)||(36585510-36585677)
chr7 (97-215)||(37246938-37247056)
[»] chr3 (1 HSPs)
chr3 (58-100)||(41517849-41517891)
[»] chr4 (2 HSPs)
chr4 (128-216)||(9047571-9047659)
chr4 (153-215)||(29962042-29962104)
[»] chr1 (1 HSPs)
chr1 (182-222)||(46262404-46262444)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 36585677 - 36585510
Alignment:
Q  58 atcagggatactatctgaccaaaaaatttccgacaacatcaaagaaagatctatgttagcaagcccacctgcacaagtattgccttctctgtaagtatgt 157  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  36585677 atcagggatactatcttaccaaaaaatttccgacaacatcaaagaaagatctatgttagcaagcccacatgcacaagtattgccttctctgtaaatatgt 36585578  T
Q  158 gacacaaaaaacctcatattactcaatctaactaaacaattttgccatctgtttcttaagcaccacgg 225  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36585577 gacacaaaaaacctcatattactcaatctaactaaacaattttgacatctgtttcttaagcaccacgg 36585510  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 37247056 - 37246938
Alignment:
Q  97 caaagaaagatctatgttagcaagcccacctgcacaagtattgccttctctgtaagtatgtgacacaaaaaacctcatattactcaatctaactaaacaa 196  Q
    ||||| |||| ||| ||| ||||| ||| ||||||||  ||| |||||||| ||| |||| |||||||||||||||||||| || |||||||||  ||||    
T  37247056 caaagtaagacctaggtttgcaaggccatctgcacaaacattaccttctctataaatatgggacacaaaaaacctcatatttcttaatctaactttacaa 37246957  T
Q  197 ttttgccatctgtttctta 215  Q
    || | ||| || |||||||    
T  37246956 ttataccacctatttctta 37246938  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 41517849 - 41517891
Alignment:
Q  58 atcagggatactatctgaccaaaaaatttccgacaacatcaaa 100  Q
    |||||||||||||| ||||||||||||||||||| ||||||||    
T  41517849 atcagggatactatatgaccaaaaaatttccgacgacatcaaa 41517891  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 9047571 - 9047659
Alignment:
Q  128 gcacaagtattgccttctctgtaagtatgtgacacaaaaaacctcatattactcaatctaactaaacaattttgccatctgtttcttaa 216  Q
    ||||||| ||| |||||||| ||| | || ||||| | |||||||||||| ||||||||| | |  |||||||||||||| ||||||||    
T  9047571 gcacaagcattcccttctctataattgtgagacaccacaaacctcatatttctcaatctagccatgcaattttgccatctatttcttaa 9047659  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 29962042 - 29962104
Alignment:
Q  153 tatgtgacacaaaaaacctcatattactcaatctaactaaacaattttgccatctgtttctta 215  Q
    |||| ||||| | ||| ||||| || || |||||||||||||||||||||||||| |||||||    
T  29962042 tatgggacactacaaatctcatgtttcttaatctaactaaacaattttgccatctatttctta 29962104  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 46262404 - 46262444
Alignment:
Q  182 aatctaactaaacaattttgccatctgtttcttaagcacca 222  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  46262404 aatctaactaaacaattttgtcatctgtttcttaaacacca 46262444  T

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