View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_132 (Length: 271)
Name: NF1358_low_132
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_132 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 2429965 - 2430198
Alignment:
| Q |
30 |
tcagcctcgcttgtgtccttnnnnnnnggtaaatatagatgtttttgttagtattttttaagtcttaaggtcttctctactttgaaatggaacatcatcc |
129 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
2429965 |
tcagcctcgcttgtatccttaaaaaaaggtaaatatagatgtttttgttagtgttttttaaatcttaaggtcttctctgctttgaaatgggacatcatcc |
2430064 |
T |
|
| Q |
130 |
ttccatcctagttttttctcattnnnnnnnnnt-ttccatgaacttatgatcaattatgcttacttacatctcataaaaattaattctaacaaaatgaag |
228 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2430065 |
ttccatcctagttttttctcattaaaaaaaaaaattccatgaacttatgatcaattatgcttacttacatctcataaaaattaattctaacaaaatgaag |
2430164 |
T |
|
| Q |
229 |
aatgggaaaggtagaatattttccgcccctatga |
262 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||| |
|
|
| T |
2430165 |
aatgagaaaggtagactattttccgtccctatga |
2430198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University