View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_133 (Length: 269)
Name: NF1358_low_133
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_133 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 15021885 - 15022097
Alignment:
| Q |
15 |
tatggaccctgatattgctaataatattagacaatgttggaagaagcaagtgtaatcttttaggtgcagagcattttaatatttatatggtgtatgtaat |
114 |
Q |
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||||| |||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15021885 |
tatggcccctgatattactaatattattagacaatgtttgaagaatcaagtgtaatcttttaggtgcagagcattttaatatttatatggtgtatgtaat |
15021984 |
T |
|
| Q |
115 |
gcacttatcgtgtcctacattaaaatgttttgccactaaaagtaaatgcaattactcaaaatagaatgtgaaataatgagagttccgtaaatatgttgtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
15021985 |
gcacttatcgtgtcctacattaaaatgttttgccactaaaagtaaatgcaattactcaaaatagaatgtgaaataatgagagttccataaatatattgtt |
15022084 |
T |
|
| Q |
215 |
agcaatctgcagt |
227 |
Q |
| |
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||||||||||||| |
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| T |
15022085 |
agcaatctgcagt |
15022097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 15029003 - 15029228
Alignment:
| Q |
15 |
tatggaccctgatattgctaataatattagacaatgttggaagaagcaagtgtaatcttttaggtgcagagcattttaatatttatatggtgtatgtaat |
114 |
Q |
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||||| |||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15029003 |
tatggcccctgatattactaatattattagacaatgtttgaagaagcaagtgtaatcttttaggtgcagagcattttaatatttatatggtgtatgtaat |
15029102 |
T |
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| Q |
115 |
gcacttatcgtgtcctacattaaaatgttttgccactaaaagtaaatgcaattactcaaaatagaatgtgaaataatgagagttccgtaaatatgttgtt |
214 |
Q |
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| T |
15029103 |
gcaattatcatgtcctacattaaaatgttttgccactaaaagtaaacgcaattactcaaaatagaatgtgaaataacgagcgttccgtaaatatattgtt |
15029202 |
T |
|
| Q |
215 |
agcaatctgcagtctctgtaatgaat |
240 |
Q |
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||||||||||||||||| |||||||| |
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| T |
15029203 |
agcaatctgcagtctctataatgaat |
15029228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 15007768 - 15007980
Alignment:
| Q |
15 |
tatggaccctgatattgctaataatattagacaatgttggaagaagcaagtgtaatcttttaggtgcagagcattttaatatttatatggtgtatgtaat |
114 |
Q |
| |
|
||||| |||||||||| |||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15007768 |
tatggcccctgatattactaatattattagacaatgtttgaagaaacaagtgtaatcttttaggtgcagagcattttaatatttatatggtgtatgtaat |
15007867 |
T |
|
| Q |
115 |
gcacttatcgtgtcctacattaaaatgttttgccactaaaagtaaatgcaattactcaaaatagaatgtgaaataatgagagttccgtaaatatgttgtt |
214 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
15007868 |
gcaattatcatgtcctacattaaaatgttttgccactaaaagtaaatgcaattactcaaaatagaatgtgaaataatgagagttccataaatatattgtt |
15007967 |
T |
|
| Q |
215 |
agcaatctgcagt |
227 |
Q |
| |
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||||||||||||| |
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| T |
15007968 |
agcaatctgcagt |
15007980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 23289540 - 23289601
Alignment:
| Q |
166 |
ttactcaaaatagaatgtgaaataatgagagttccgtaaatatgttgttagcaatctgcagt |
227 |
Q |
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|||||||||||||||| |||||||||| |||| |||||||| |||||||||||||||||| |
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|
| T |
23289540 |
ttactcaaaatagaattcgaaataatgaaggttctgtaaatatcttgttagcaatctgcagt |
23289601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 45205059 - 45205099
Alignment:
| Q |
75 |
taggtgcagagcattttaatatttatatggtgtatgtaatg |
115 |
Q |
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| T |
45205059 |
taggtgcagaatattttaatatttatatggtgtatgtaatg |
45205099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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