View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_135 (Length: 266)

Name: NF1358_low_135
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_135
NF1358_low_135
[»] chr8 (1 HSPs)
chr8 (9-237)||(15744897-15745125)
[»] scaffold0190 (1 HSPs)
scaffold0190 (9-228)||(4406-4625)
[»] chr4 (10 HSPs)
chr4 (132-186)||(7615236-7615290)
chr4 (142-212)||(39082323-39082393)
chr4 (129-204)||(39087985-39088060)
chr4 (128-182)||(7606226-7606280)
chr4 (128-178)||(7637058-7637108)
chr4 (129-191)||(39091389-39091451)
chr4 (128-212)||(39097654-39097738)
chr4 (143-186)||(7656227-7656270)
chr4 (181-232)||(37599591-37599642)
chr4 (142-200)||(39070931-39070989)
[»] chr7 (2 HSPs)
chr7 (128-182)||(8941812-8941866)
chr7 (132-184)||(8936171-8936223)
[»] chr3 (2 HSPs)
chr3 (141-186)||(40147453-40147498)
chr3 (141-186)||(8102441-8102486)
[»] chr6 (1 HSPs)
chr6 (132-186)||(6500485-6500539)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 15744897 - 15745125
Alignment:
Q  9 gagatgaacaagatgattgctttgcaatctgatgagatgttgaaaaatgaatatgagagttggttgaaaacacctagttttattactgatgctaagttca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15744897 gagatgaacaagatgattgctttgcaatctgatgagatgttgaaaaatgaatatgagagttggttgaaaacacctagttttattactgatgctaagttca 15744996  T
Q  109 attgtaaaacattagtgggtagtagttcaccctggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaactgggggtgaaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15744997 attgtaaaacattagtgggtagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacctgtgggggttcgaactgggggtgcaaa 15745096  T
Q  209 taaagaaaatggaaatatttgtgtatttc 237  Q
    |||||||||||||||||||||||||||||    
T  15745097 taaagaaaatggaaatatttgtgtatttc 15745125  T

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Target: scaffold0190 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 9 - 228
Target Start/End: Complemental strand, 4625 - 4406
Alignment:
Q  9 gagatgaacaagatgattgctttgcaatctgatgagatgttgaaaaatgaatatgagagttggttgaaaacacctagttttattactgatgctaagttca 108  Q
    ||||||||||||||||||| |||||| |||||||||| |||||||||| | ||||| | |||||| | |||||| |||||| | ||   || || |  ||    
T  4625 gagatgaacaagatgattgttttgcactctgatgagaggttgaaaaatcactatgaaaattggttaataacaccgagttttgtcacctctggtatggcca 4526  T
Q  109 attgtaaaacattagtgggtagtagttcaccctggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaactgggggtgaaaa 208  Q
    |  || |  |||| ||   | || |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||    
T  4525 acagtgattcattggtcattggtggttctccttggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaagtgggggttcaaa 4426  T
Q  209 taaagaaaatggaaatattt 228  Q
    ||||  ||||||||| ||||    
T  4425 taaaagaaatggaaagattt 4406  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 7615290 - 7615236
Alignment:
Q  132 agttcaccctggtttgatgtttatggtaatgattttggttggggaaaacctgtgg 186  Q
    ||||| || |||||||||||||||||||||||||||||||||||||| |||||||    
T  7615290 agttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtgg 7615236  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 39082393 - 39082323
Alignment:
Q  142 ggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaactgggggtgaaaataaa 212  Q
    |||||||||||||||||||||||||||||||||| || || || |||||||||| |||||||  |||||||    
T  39082393 ggtttgatgtttatggtaatgattttggttgggggaagccggtaggggttcgaagtgggggttcaaataaa 39082323  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 204
Target Start/End: Complemental strand, 39088060 - 39087985
Alignment:
Q  129 agtagttcaccctggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaactgggggtg 204  Q
    |||||||| ||  ||||||||||||||| |||||||||||||||||| || ||||| ||||||||||  |||||||    
T  39088060 agtagttctccaaggtttgatgtttatgataatgattttggttgggggaagcctgtaggggttcgaagcgggggtg 39087985  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Complemental strand, 7606280 - 7606226
Alignment:
Q  128 tagtagttcaccctggtttgatgtttatggtaatgattttggttggggaaaacct 182  Q
    ||||||||| || |||||||||||||||||||||||||| || ||||||||||||    
T  7606280 tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct 7606226  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 178
Target Start/End: Complemental strand, 7637108 - 7637058
Alignment:
Q  128 tagtagttcaccctggtttgatgtttatggtaatgattttggttggggaaa 178  Q
    ||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  7637108 tagtagttctccatggtttgatgtttatggtaatgattttggatggggaaa 7637058  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 39091451 - 39091389
Alignment:
Q  129 agtagttcaccctggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggtt 191  Q
    |||||||| ||  ||||||||||||| |||||||||||||||||||| || ||||||||||||    
T  39091451 agtagttctccgaggtttgatgtttacggtaatgattttggttgggggaagcctgtgggggtt 39091389  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 39097738 - 39097654
Alignment:
Q  128 tagtagttcaccctggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaactgggggtgaaaataaa 212  Q
    ||||||||| ||  |||||||||||||||||||||| ||||||||||| || ||||| |  ||| ||| |||||||| |||||||    
T  39097738 tagtagttctccaaggtttgatgtttatggtaatgactttggttggggtaagcctgttgctgttagaagtgggggtgcaaataaa 39097654  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 7656227 - 7656270
Alignment:
Q  143 gtttgatgtttatggtaatgattttggttggggaaaacctgtgg 186  Q
    ||||||||||||||||||||||||||| |||||||| |||||||    
T  7656227 gtttgatgtttatggtaatgattttggatggggaaagcctgtgg 7656270  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 232
Target Start/End: Complemental strand, 37599642 - 37599591
Alignment:
Q  181 ctgtgggggttcgaactgggggtgaaaataaagaaaatggaaatatttgtgt 232  Q
    ||||||||||||||  ||||||||||||||||  ||||| ||||||||||||    
T  37599642 ctgtgggggttcgagttgggggtgaaaataaaagaaatgaaaatatttgtgt 37599591  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 39070989 - 39070931
Alignment:
Q  142 ggtttgatgtttatggtaatgattttggttggggaaaacctgtgggggttcgaactggg 200  Q
    |||||||||||| ||| ||||||||||| |||||||| || |||| |||||||| ||||    
T  39070989 ggtttgatgtttttggcaatgattttggctggggaaagccagtggcggttcgaagtggg 39070931  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 8941812 - 8941866
Alignment:
Q  128 tagtagttcaccctggtttgatgtttatggtaatgattttggttggggaaaacct 182  Q
    ||||||||| || |||||||||||||||||||||||||| || ||||||||||||    
T  8941812 tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct 8941866  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 8936171 - 8936223
Alignment:
Q  132 agttcaccctggtttgatgtttatggtaatgattttggttggggaaaacctgt 184  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||| |||||    
T  8936171 agttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgt 8936223  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 40147453 - 40147498
Alignment:
Q  141 tggtttgatgtttatggtaatgattttggttggggaaaacctgtgg 186  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||    
T  40147453 tggtttgatgtttatggtaatgattttggatggggagaacctgtgg 40147498  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 186
Target Start/End: Complemental strand, 8102486 - 8102441
Alignment:
Q  141 tggtttgatgtttatggtaatgattttggttggggaaaacctgtgg 186  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| ||||    
T  8102486 tggtttgatgtttatggcaataattttggatggggaaaaccagtgg 8102441  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Complemental strand, 6500539 - 6500485
Alignment:
Q  132 agttcaccctggtttgatgtttatggtaatgattttggttggggaaaacctgtgg 186  Q
    ||||| || ||||||||| ||||||||||||||||||| ||||| ||||| ||||    
T  6500539 agttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtgg 6500485  T

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