View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_137 (Length: 264)

Name: NF1358_low_137
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_137
NF1358_low_137
[»] chr8 (3 HSPs)
chr8 (54-89)||(36660736-36660771)
chr8 (61-93)||(13327659-13327691)
chr8 (61-93)||(38869907-38869939)
[»] chr4 (2 HSPs)
chr4 (57-91)||(37861313-37861347)
chr4 (57-93)||(28675672-28675708)
[»] chr3 (1 HSPs)
chr3 (60-93)||(24355447-24355480)
[»] chr7 (1 HSPs)
chr7 (61-93)||(7907590-7907622)
[»] chr2 (1 HSPs)
chr2 (61-93)||(41542735-41542767)


Alignment Details
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 89
Target Start/End: Complemental strand, 36660771 - 36660736
Alignment:
Q  54 aaataaagggtcgtgttaacttgtgcccttaaggca 89  Q
    |||||||||||| |||||||||||||||||||||||    
T  36660771 aaataaagggtcatgttaacttgtgcccttaaggca 36660736  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 13327659 - 13327691
Alignment:
Q  61 gggtcgtgttaacttgtgcccttaaggcacatg 93  Q
    |||||||| ||||||||||||||||||||||||    
T  13327659 gggtcgtgctaacttgtgcccttaaggcacatg 13327691  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 38869939 - 38869907
Alignment:
Q  61 gggtcgtgttaacttgtgcccttaaggcacatg 93  Q
    ||||| |||||||||||||||||||||||||||    
T  38869939 gggtcatgttaacttgtgcccttaaggcacatg 38869907  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 91
Target Start/End: Complemental strand, 37861347 - 37861313
Alignment:
Q  57 taaagggtcgtgttaacttgtgcccttaaggcaca 91  Q
    ||||||||| |||||||||||||||||||||||||    
T  37861347 taaagggtcatgttaacttgtgcccttaaggcaca 37861313  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 28675672 - 28675708
Alignment:
Q  57 taaagggtcgtgttaacttgtgcccttaaggcacatg 93  Q
    ||||||||| |||||||||||||||||| ||||||||    
T  28675672 taaagggtcatgttaacttgtgcccttagggcacatg 28675708  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 93
Target Start/End: Original strand, 24355447 - 24355480
Alignment:
Q  60 agggtcgtgttaacttgtgcccttaaggcacatg 93  Q
    |||||| |||||||||||||||||||||||||||    
T  24355447 agggtcatgttaacttgtgcccttaaggcacatg 24355480  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 7907622 - 7907590
Alignment:
Q  61 gggtcgtgttaacttgtgcccttaaggcacatg 93  Q
    ||||| |||||||||||||||||||||||||||    
T  7907622 gggtcatgttaacttgtgcccttaaggcacatg 7907590  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 41542735 - 41542767
Alignment:
Q  61 gggtcgtgttaacttgtgcccttaaggcacatg 93  Q
    |||| ||||||||||||||||||||||||||||    
T  41542735 gggtagtgttaacttgtgcccttaaggcacatg 41542767  T

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