View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_144 (Length: 251)
Name: NF1358_low_144
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_144 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 31201883 - 31201640
Alignment:
| Q |
1 |
agcttggggtttagtcaacagtaattatccgtttttgtgggtggttcgaccgggactaatcgatggccacgagtggctcaggcctttgccaaatgagttc |
100 |
Q |
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| T |
31201883 |
agcttggggtttagtcaacagtaattatccgtttttgtgggtggttagaccgggactaatcggtggccacgagtggcttgggccgttgccaaatgggttc |
31201784 |
T |
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| Q |
101 |
atggagaatttagaaggtagaggctatatagtgaaatgggcaccacaacaagaaattctagctcatcaagctgttggtttgttttggacacataatggtt |
200 |
Q |
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| T |
31201783 |
atggagaatttagaaggtagaggctatatagtgaaatgggcaccacaacaagaaattctagctcatcaagctgttggtttgttttggactcataatggtt |
31201684 |
T |
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| Q |
201 |
ggaattcaactttggagagtgtttgtgaaggggttcctatgata |
244 |
Q |
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| T |
31201683 |
ggaattcaactttggagagtatttgtgaaggggttcctatgata |
31201640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 31210032 - 31210093
Alignment:
| Q |
182 |
ttttggacacataatggttggaattcaactttggagagtgtttgtgaaggggttcctatgat |
243 |
Q |
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| T |
31210032 |
ttttggactcataatggttggaattcaactttggagagtgtttgcgaaggtgttccaatgat |
31210093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 26672203 - 26672140
Alignment:
| Q |
181 |
gttttggacacataatggttggaattcaactttggagagtgtttgtgaaggggttcctatgata |
244 |
Q |
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| T |
26672203 |
gtttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatgata |
26672140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 26943801 - 26943738
Alignment:
| Q |
181 |
gttttggacacataatggttggaattcaactttggagagtgtttgtgaaggggttcctatgata |
244 |
Q |
| |
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||||| |||||||||||||||||||||||| ||||| |||||||||| || ||||| |||||| |
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| T |
26943801 |
gtttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatgata |
26943738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 13648186 - 13648226
Alignment:
| Q |
182 |
ttttggacacataatggttggaattcaactttggagagtgt |
222 |
Q |
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| T |
13648186 |
tttttgacacataatgggtggaattcaactttggaaagtgt |
13648226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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