View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_145 (Length: 251)
Name: NF1358_low_145
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_145 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 15361487 - 15361245
Alignment:
| Q |
10 |
attattcttcaacgttttaggttaa-ttttttccgatttctatttgaatgacttattgcatgcttgggacggcgttcaaatgggcccaaacgcacgactg |
108 |
Q |
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| T |
15361487 |
attattcttcaacgttttaggttaaatttttttcgatttctatttgaatgacttattgcatgcttgggacggcgtccaaatgtgcccaaacgcacgactg |
15361388 |
T |
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| Q |
109 |
tgtagaaacttgcaattatagtttcacaaaaatcacatcaaattaaaagtgtattgaaaagtgaaaaatatgatgcaaacttcaatcaaaacactcaata |
208 |
Q |
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| T |
15361387 |
tgtagaaacttgcaattatagtttcacaaaaatcacatcaaattaaaagtgtattgaaaagtgaaaaatatgatgcaaactccaatcaaaacactcaata |
15361288 |
T |
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| Q |
209 |
acttttgtaaaattaaagtttttagaacattacgatgtatctt |
251 |
Q |
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| T |
15361287 |
acttttgtaaaattaaagtttttagaacattacgatgtatctt |
15361245 |
T |
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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 24257272 - 24257318
Alignment:
| Q |
96 |
aaacgcacgactgtgtagaaacttgcaattatagtttcacaaaaatc |
142 |
Q |
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| T |
24257272 |
aaacgcacgactgtgtagaagcttgcaattgtagtttcacaaaaatc |
24257318 |
T |
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