View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_147 (Length: 251)

Name: NF1358_low_147
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_147
NF1358_low_147
[»] chr7 (7 HSPs)
chr7 (7-228)||(33773819-33774037)
chr7 (155-223)||(29996949-29997017)
chr7 (156-217)||(27621962-27622023)
chr7 (156-228)||(37264425-37264497)
chr7 (156-228)||(32971939-32972011)
chr7 (156-228)||(34064328-34064400)
chr7 (156-228)||(40023649-40023721)
[»] scaffold0155 (1 HSPs)
scaffold0155 (156-228)||(7843-7915)
[»] chr6 (3 HSPs)
chr6 (156-228)||(34803626-34803698)
chr6 (156-228)||(15325260-15325332)
chr6 (160-223)||(15371789-15371852)
[»] chr4 (9 HSPs)
chr4 (156-227)||(32949769-32949840)
chr4 (156-228)||(28330908-28330980)
chr4 (156-228)||(20964209-20964281)
chr4 (156-223)||(5499354-5499421)
chr4 (158-228)||(18872578-18872648)
chr4 (186-228)||(38320025-38320067)
chr4 (156-217)||(53848771-53848832)
chr4 (156-228)||(41594769-41594841)
chr4 (156-228)||(54217485-54217557)
[»] chr2 (6 HSPs)
chr2 (159-228)||(3200009-3200078)
chr2 (156-228)||(314541-314613)
chr2 (156-228)||(6972462-6972534)
chr2 (156-228)||(13222182-13222254)
chr2 (154-228)||(5425972-5426046)
chr2 (155-228)||(43427007-43427080)
[»] chr1 (9 HSPs)
chr1 (156-228)||(28424246-28424319)
chr1 (156-217)||(46363332-46363393)
chr1 (156-223)||(3160609-3160676)
chr1 (159-228)||(37541038-37541107)
chr1 (158-222)||(5503538-5503602)
chr1 (156-228)||(18186120-18186192)
chr1 (156-228)||(26583842-26583914)
chr1 (157-228)||(26760390-26760461)
chr1 (156-228)||(29756064-29756136)
[»] chr8 (5 HSPs)
chr8 (156-228)||(14690074-14690146)
chr8 (156-228)||(32231307-32231379)
chr8 (156-228)||(14748625-14748697)
chr8 (162-228)||(33743890-33743956)
chr8 (186-222)||(22490501-22490536)
[»] chr5 (3 HSPs)
chr5 (156-228)||(6629318-6629390)
chr5 (156-214)||(15898605-15898663)
chr5 (156-214)||(38979032-38979090)
[»] chr3 (1 HSPs)
chr3 (156-217)||(46194128-46194189)


Alignment Details
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 7 - 228
Target Start/End: Original strand, 33773819 - 33774037
Alignment:
Q  7 gtagcataggaaaggagcacgattttccttttcctttcactattctggtcatcaagtgcgcgtaaagtaagagagtgtaatatgaatatctattgttgtc 106  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||    
T  33773819 gtagcatgggaaaggagcacgattttccttttcctttcactattctggtcatcaagtgcgcgtaaagt----gagtgtaatatgaatatccattgttgtc 33773914  T
Q  107 gtcgttgaataaaagattcaaaaggatcttcaaattaaaataagtttct-cctccgtcccattttaattgagcctttaatttatttcacatgtattaaga 205  Q
    ||||||||||||||| |||||| ||||||| |||||||||| ||||||| ||||||||||||||||| ||| | ||||||| ||||||||| ||||||||    
T  33773915 gtcgttgaataaaaggttcaaatggatcttgaaattaaaatgagtttctccctccgtcccattttaactgaacttttaattcatttcacatatattaaga 33774014  T
Q  206 aaaagtgtataaatgaaatagag 228  Q
    |||||||||||| ||||| ||||    
T  33774015 aaaagtgtataagtgaaagagag 33774037  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 29996949 - 29997017
Alignment:
Q  155 tcctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaa 223  Q
    |||||||||| ||||||| ||||||||| | | ||||||||  |||||||||||||||||||| |||||    
T  29996949 tcctccgtcctattttaactgagcctttgactcatttcacacttattaagaaaaagtgtataagtgaaa 29997017  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 27622023 - 27621962
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataa 217  Q
    |||||||||||||||||||||||  |||| | ||||||||  |||||||||||| |||||||    
T  27622023 cctccgtcccattttaattgagctcttaactcatttcacacttattaagaaaaaatgtataa 27621962  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 37264497 - 37264425
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| |||||||||   | ||||||||  |||||||||||||| ||||| ||||| ||||    
T  37264497 cctccgtcccattttaagtgagccttttgctcatttcacacatattaagaaaaagtatataagtgaaagagag 37264425  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 32971939 - 32972011
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||| |||||||||||||| | || | | ||||||||  |||||||||||| ||||||| ||||| ||||    
T  32971939 cctccgttccattttaattgagtcattgactcatttcacacttattaagaaaaaatgtataagtgaaagagag 32972011  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 34064400 - 34064328
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||| |||| |||||  |||||||||  ||  |||||||  |||||| ||||||||||||||||||||||||    
T  34064400 cctccctcccgttttatctgagcctttttttcttttcacacatattaaaaaaaagtgtataaatgaaatagag 34064328  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 40023649 - 40023721
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||| ||||| ||||| ||||| |||  || |||||||||||||||||||||| | ||||| ||||| ||||    
T  40023649 cctccatcccactttaagtgagctttttgttaatttcacatgtattaagaaaaaatatataattgaaaaagag 40023721  T

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Target: scaffold0155 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 7843 - 7915
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||| |||||||||||||| || | | ||||||||| |||||||||||| ||||||||||||| ||||    
T  7843 cctccgtcctattttaattgagcccttgactcatttcacatttattaagaaaaaatgtataaatgaaagagag 7915  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 34803626 - 34803698
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||||||||||||||||||||||| |||  | ||||||||  ||||||||||||||||||||| |||| ||||    
T  34803626 cctccgtcccattttaattgagcccttagctcatttcacacttattaagaaaaagtgtataaaggaaagagag 34803698  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 15325332 - 15325260
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| |||||  || | | ||||||||  |||||||||||||||||||| ||||| ||||    
T  15325332 cctccgtcccattttaactgagctcttgactcatttcacaattattaagaaaaagtgtataagtgaaagagag 15325260  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 223
Target Start/End: Original strand, 15371789 - 15371852
Alignment:
Q  160 cgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaa 223  Q
    ||||||||||||| |||||| ||  || ||||||||  |||||||||||||||||||| |||||    
T  15371789 cgtcccattttaactgagcccttggttcatttcacaattattaagaaaaagtgtataagtgaaa 15371852  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 227
Target Start/End: Original strand, 32949769 - 32949840
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaataga 227  Q
    |||| |||||||||||| ||||||||| | | ||||||||  |||||| |||||||||||||||||||||||    
T  32949769 cctctgtcccattttaactgagcctttgactcatttcacacttattaaaaaaaagtgtataaatgaaataga 32949840  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 28330980 - 28330908
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| |||||| || | | ||||||||  |||||||||||||||||||| ||||| ||||    
T  28330980 cctccgtcccattttaactgagccattgactcatttcacacttattaagaaaaagtgtataagtgaaagagag 28330908  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 20964209 - 20964281
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| |||||  || | | ||||||||  |||||||||||||||||||| ||||| ||||    
T  20964209 cctccgtcccattttaactgagctcttgactcatttcacacttattaagaaaaagtgtataagtgaaagagag 20964281  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 5499354 - 5499421
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaa 223  Q
    |||||||||||||||||  ||||||||  || |||| |||  |||||||||||||||||||| |||||    
T  5499354 cctccgtcccattttaaccgagccttttgttcatttgacacatattaagaaaaagtgtataagtgaaa 5499421  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 228
Target Start/End: Original strand, 18872578 - 18872648
Alignment:
Q  158 tccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||||| |||||||| ||| | |||  || |||||||| ||||||||||||||||||||| ||||| ||||    
T  18872578 tccgtctcattttaagtgaacattttgttcatttcacacgtattaagaaaaagtgtataagtgaaagagag 18872648  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 38320067 - 38320025
Alignment:
Q  186 ttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||    
T  38320067 ttatttcacatttattaagaaaaagtgtataagtgaaagagag 38320025  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 53848832 - 53848771
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataa 217  Q
    |||| ||| |||||||||||||| |||  || ||||||| | ||||||||||||||||||||    
T  53848832 cctcggtctcattttaattgagcttttggttcatttcacgtttattaagaaaaagtgtataa 53848771  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 41594769 - 41594841
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||| |||  ||||||||  || ||||||||| |||| ||||||||||| ||| ||||| ||||    
T  41594769 cctccgtcccattataagcgagccttttgttcatttcacatatattgagaaaaagtgtttaagtgaaagagag 41594841  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 54217557 - 54217485
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||||||||||||||||  | |||||| | | |||||| |  |||||||||||||||||||| ||||| ||||    
T  54217557 cctccgtcccattttaacggggcctttgactcatttcatacttattaagaaaaagtgtataagtgaaagagag 54217485  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 3200078 - 3200009
Alignment:
Q  159 ccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||||| | || |||||||||| || |||||||||||  ||||||||||||| ||||    
T  3200078 ccgtcccattttaattgagtcattgatttatttcatatttattaagaaaagatgtataaatgaaagagag 3200009  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 314613 - 314541
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| |||||  || | | ||||||||  |||||||||||||||||||| ||||| ||||    
T  314613 cctccgtcccattttaactgagcgattgactcatttcacacttattaagaaaaagtgtataagtgaaagagag 314541  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 6972462 - 6972534
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| |||| |||| | | ||||||||  |||||||||||| ||||||| ||||| ||||    
T  6972462 cctccgtcccattttaactgagtctttgactcatttcacacttattaagaaaaaatgtataagtgaaagagag 6972534  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 13222254 - 13222182
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||||||||||||||||  ||||| || | ||||||||||  |||||||||||| ||||||| ||||| ||||    
T  13222254 cctccgtcccattttaaccgagccattgacttatttcacacttattaagaaaaaatgtataagtgaaagagag 13222182  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 228
Target Start/End: Complemental strand, 5426046 - 5425972
Alignment:
Q  154 ctcctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||||| |||| || |||| ||| |||||  || |||||||| ||||||||||||||||||||| ||||| ||||    
T  5426046 ctcctctgtcctatcttaactgatccttttgttcatttcacacgtattaagaaaaagtgtataagtgaaagagag 5425972  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 43427007 - 43427080
Alignment:
Q  155 tcctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||||||||||||||||| |||||  || | | |||||| |  | |||||||||||||||||||||||| ||||    
T  43427007 tcctccgtcccattttaactgagctattgactcatttcatactttttaagaaaaagtgtataaatgaaagagag 43427080  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 28424246 - 28424319
Alignment:
Q  156 cctccgtcccattttaattgagccttta-atttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||||||||  |||  ||| ||||||||  |||||||||||||||||||||| ||||||||    
T  28424246 cctccgtcccattttaattgagtttttttattaatttcacacatattaagaaaaagtgtataaataaaatagag 28424319  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 46363332 - 46363393
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataa 217  Q
    ||||||||| ||||||||||||||||| | | ||||||||  ||||||||||||||||||||    
T  46363332 cctccgtccaattttaattgagcctttcactcatttcacacttattaagaaaaagtgtataa 46363393  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 3160609 - 3160676
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaa 223  Q
    ||||||||||||||||| |||||| || | | ||||||||  |||||||||||||||||||| |||||    
T  3160609 cctccgtcccattttaactgagcccttgactcatttcacacttattaagaaaaagtgtataagtgaaa 3160676  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 159 - 228
Target Start/End: Original strand, 37541038 - 37541107
Alignment:
Q  159 ccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||| |||||||||||||| | || ||| ||||||||  |||||||||||||||||||| ||||| ||||    
T  37541038 ccgttccattttaattgagtcattgattcatttcacacttattaagaaaaagtgtataagtgaaagagag 37541107  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 5503602 - 5503538
Alignment:
Q  158 tccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaa 222  Q
    ||||||||||||||||||||   || | | ||||||||  |||||||||||||||||||||||||    
T  5503602 tccgtcccattttaattgagtgattgactcatttcacacttattaagaaaaagtgtataaatgaa 5503538  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 18186120 - 18186192
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||| | | ||||||||||||| | | |||||||| ||||||||||||| ||||| | ||||||||||    
T  18186120 cctccgtcctactataattgagccttttactcatttcacacgtattaagaaaaattgtatgagtgaaatagag 18186192  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 26583914 - 26583842
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| ||| || || | | ||||||||  |||||||||||||||||||| ||||| ||||    
T  26583914 cctccgtcccattttaactgaacccttgactcatttcacacttattaagaaaaagtgtataagtgaaagagag 26583842  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 26760461 - 26760390
Alignment:
Q  157 ctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||  |||||||| | | ||||||||  |||||||||||| ||||||| ||||| ||||    
T  26760461 ctccgtcccattttaaccgagcctttgactcatttcacacttattaagaaaaaatgtataagtgaaagagag 26760390  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 29756064 - 29756136
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||||||||||||||||  ||||| ||   | ||||||||  |||||||||||||||||||| ||||| ||||    
T  29756064 cctccgtcccattttaacggagcccttggctcatttcacacttattaagaaaaagtgtataagtgaaagagag 29756136  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Complemental strand, 14690146 - 14690074
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| |||||| || | | ||||||||  |||||||||||||||||||| ||||| ||||    
T  14690146 cctccgtcccattttaactgagcccttgactcatttcacacttattaagaaaaagtgtataagtgaaagagag 14690074  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 32231307 - 32231379
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    |||||||||||||||||||||||| ||   | ||||||||| |||||||||||| ||||||| ||||| ||||    
T  32231307 cctccgtcccattttaattgagcccttgtctcatttcacatttattaagaaaaaatgtataagtgaaagagag 32231379  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 14748625 - 14748697
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||| |||||| || | | |||| |||  |||||||||||||||||||| ||||| ||||    
T  14748625 cctccgtcccattttaactgagcccttgactcattttacacttattaagaaaaagtgtataagtgaaagagag 14748697  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 33743956 - 33743890
Alignment:
Q  162 tcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||| |  ||  || ||||||||  |||||||||||||||||||||||||| ||||    
T  33743956 tcccattttaattgaactcttgcttcatttcacacttattaagaaaaagtgtataaatgaaagagag 33743890  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 22490536 - 22490501
Alignment:
Q  186 ttatttcacatgtattaagaaaaagtgtataaatgaa 222  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22490536 ttatttcacatgtattaagaaaaa-tgtataaatgaa 22490501  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 6629318 - 6629390
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataaatgaaatagag 228  Q
    ||||||||||||||||  |||||||||  ||  |||||||  |||||||||||||||||||||||||| ||||    
T  6629318 cctccgtcccattttatctgagcctttttttcttttcacacatattaagaaaaagtgtataaatgaaagagag 6629390  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 15898663 - 15898605
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgta 214  Q
    ||||||||||||||||| |||| ||||| || ||||||||  |||||||||||| ||||    
T  15898663 cctccgtcccattttaaatgagtctttagttcatttcacacttattaagaaaaaatgta 15898605  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 38979090 - 38979032
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgta 214  Q
    ||||||||||||||||| |||||| || | | ||||||||  |||||||||||||||||    
T  38979090 cctccgtcccattttaactgagccatttactcatttcacacttattaagaaaaagtgta 38979032  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 46194128 - 46194189
Alignment:
Q  156 cctccgtcccattttaattgagcctttaatttatttcacatgtattaagaaaaagtgtataa 217  Q
    ||||||||||| ||||| |||||| || | | ||||||||  ||||||||||||||||||||    
T  46194128 cctccgtcccaatttaactgagcccttgactaatttcacacttattaagaaaaagtgtataa 46194189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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