View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_148 (Length: 251)

Name: NF1358_low_148
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_148
NF1358_low_148
[»] chr1 (3 HSPs)
chr1 (8-251)||(18472701-18472944)
chr1 (7-198)||(25921693-25921882)
chr1 (93-197)||(43407207-43407307)
[»] chr7 (4 HSPs)
chr7 (7-236)||(48653609-48653838)
chr7 (133-239)||(48576918-48577021)
chr7 (6-173)||(7589147-7589312)
chr7 (93-197)||(10288631-10288731)
[»] chr6 (3 HSPs)
chr6 (7-239)||(13773195-13773427)
chr6 (32-145)||(20555538-20555644)
chr6 (136-213)||(31280605-31280682)
[»] chr5 (3 HSPs)
chr5 (7-235)||(42861581-42861809)
chr5 (16-192)||(25101745-25101915)
chr5 (16-192)||(25160838-25161008)
[»] chr2 (4 HSPs)
chr2 (7-239)||(35670564-35670792)
chr2 (33-226)||(28266950-28267144)
chr2 (32-239)||(12774229-12774442)
chr2 (36-203)||(41340068-41340233)
[»] chr8 (2 HSPs)
chr8 (7-121)||(3189246-3189363)
chr8 (18-126)||(22635850-22635958)
[»] chr4 (3 HSPs)
chr4 (9-186)||(13652750-13652926)
chr4 (9-186)||(13660875-13661051)
chr4 (104-191)||(42900030-42900117)
[»] chr3 (1 HSPs)
chr3 (93-197)||(7336534-7336634)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 18472701 - 18472944
Alignment:
Q  8 caccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18472701 caccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacca 18472800  T
Q  108 gacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgaca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18472801 gacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgaca 18472900  T
Q  208 tttatgttcatcaatccaacgcatatacccaccaatagaatatt 251  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  18472901 tttatgttcatcaatccaacgcatatacccaccgatagaatatt 18472944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 25921882 - 25921693
Alignment:
Q  7 gcaccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaac 105  Q
    |||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||||     
T  25921882 gcaccacaaagaattataagtttaacccaccactaaggcacaccaaaaatgcatatgtcatgataataaaaatagaggcaatccccgccacttaggcaat 25921783  T
Q  106 cagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataac 198  Q
    || ||||||||||||| |||| |||     |||||||||||||||||| ||||||||| ||||||  |||||||||||||||||||| |||||    
T  25921782 cacacagaaagtaataccacatcatgc---acatgacaaaagaaatctctcataaaagtcttattgttcttcttattatttcagttccataac 25921693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 43407207 - 43407307
Alignment:
Q  93 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 192  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  43407207 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 43407302  T
Q  193 gataa 197  Q
    |||||    
T  43407303 gataa 43407307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 48653609 - 48653838
Alignment:
Q  7 gcaccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48653609 gcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacc 48653708  T
Q  107 agacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgac 206  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  48653709 acacagaaagtaataacacaacatcttatacatgataaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcac 48653808  T
Q  207 atttatgttcatcaatccaacgcatatacc 236  Q
    ||||||||||||||||||||||||||||||    
T  48653809 atttatgttcatcaatccaacgcatatacc 48653838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 133 - 239
Target Start/End: Complemental strand, 48577021 - 48576918
Alignment:
Q  133 tatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatttatgttcatcaatccaacgcata 232  Q
    |||||||||||||||||||||||||||||||||| |||||||||   ||||||| |||||||||||||||| ||||||||||||||||||||||  ||||    
T  48577021 tatacatgacaaaagaaatctttcataaaaggctcatttctctt---attattttagttcgataacgatctcacatttatgttcatcaatccaaaacata 48576925  T
Q  233 tacccac 239  Q
    |||||||    
T  48576924 tacccac 48576918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 7589147 - 7589312
Alignment:
Q  6 agcaccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaac 105  Q
    ||||||||| | |||||||| ||||||||| |||| ||| |||| ||||||||  ||||||||||||||||||||||||||  ||||||||  ||   ||    
T  7589147 agcaccacaaaaaattataaatttaacccgtcactgagggacactaaaaatgc--atgtcatgataataaaaatagatgcatccccgccaccaagaggac 7589244  T
Q  106 cagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttct 173  Q
    || |||| || ||||||||||  ||  |  |||||||||||||  |||| |||||||| |||||||||    
T  7589245 cacacaggaaataataacacattataatgcacatgacaaaagaggtcttccataaaagtcttatttct 7589312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 10288631 - 10288731
Alignment:
Q  93 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 192  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  10288631 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 10288726  T
Q  193 gataa 197  Q
    |||||    
T  10288727 gataa 10288731  T

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Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 13773195 - 13773427
Alignment:
Q  7 gcaccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13773195 gcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacc 13773294  T
Q  107 agacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgac 206  Q
    | ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13773295 acacagaaagtaataactcaacatcctatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctgac 13773394  T
Q  207 atttatgttcatcaatccaacgcatatacccac 239  Q
    |||||| |||||||||||||| |||||||||||    
T  13773395 atttatattcatcaatccaacccatatacccac 13773427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 20555644 - 20555538
Alignment:
Q  32 cccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaaccagacagaaagtaataacacaacatc 131  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||||||||| ||| || |||||| ||||||      ||||||||||||||||||||    
T  20555644 cccgccactaaagcacaccaaaaatgtttatgtcatgataataaaaatagatggaat-ccaccacttgggcaac------gaaagtaataacacaacatc 20555552  T
Q  132 ttatacatgacaaa 145  Q
     | |||||||||||    
T  20555551 atgtacatgacaaa 20555538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 31280605 - 31280682
Alignment:
Q  136 acatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatttatg 213  Q
    ||||||||||||| ||||||||| || | ||||||| || |||||||||||  |||| |||||| ||| | |||||||    
T  31280605 acatgacaaaagagatctttcatgaatgtcttatttttcctcttattatttttgttctataacggtctcaaatttatg 31280682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 7 - 235
Target Start/End: Complemental strand, 42861809 - 42861581
Alignment:
Q  7 gcaccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  42861809 gcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttagacaacc 42861710  T
Q  107 agacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgac 206  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  42861709 acactgaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctcatttctcttcttattatttcagttcgataacgatctcac 42861610  T
Q  207 atttatgttcatcaatccaacgcatatac 235  Q
    |||||||||||||||||||||||||||||    
T  42861609 atttatgttcatcaatccaacgcatatac 42861581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 25101745 - 25101915
Alignment:
Q  16 agaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaa 114  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||| |||||||||| ||| ||||||||||||| |||||||| ||||||| ||||||    
T  25101745 agaattataagtttaacccgccactaaggtacatcaaaaatgcatatatcatgataatcaaa-tagatgcaatccccgccacttaagcaaccacacagaa 25101843  T
Q  115 agtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 192  Q
    | ||||| |||| |||     |||||||||| |||| || ||||||||| ||||||    ||||||||||||||||||    
T  25101844 aataataccacatcatgc---acatgacaaatgaaaactctcataaaagtcttattg---ttcttattatttcagttc 25101915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 192
Target Start/End: Original strand, 25160838 - 25161008
Alignment:
Q  16 agaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaa 114  Q
    ||||||||||||||||||||||||||||| |||  |||||||| ||| |||||||||| ||| ||||||||||||| |||||||| ||||||| ||||||    
T  25160838 agaattataagtttaacccgccactaaggtacatcaaaaatgcatatatcatgataatcaaa-tagatgcaatccccgccacttaagcaaccacacagaa 25160936  T
Q  115 agtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 192  Q
    | ||||| |||| |||     |||||||||| |||| || ||||||||| ||||||    ||||||||||||||||||    
T  25160937 aataataccacatcatgc---acatgacaaatgaaaactctcataaaagtcttattg---ttcttattatttcagttc 25161008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 35670564 - 35670792
Alignment:
Q  7 gcaccacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35670564 gcaccacaaagaattataagtttaacccgccactaaggcacaccaaaaattcttatgtcatgataataaaaatagatgcaatcccgccacttaggcaacc 35670663  T
Q  107 agacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgac 206  Q
    | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||    ||||||||||| ||    
T  35670664 acacagaaagtaataacacgacatcttatacatgacaaaagaaatctttcataaaaggctcatttatctgcttattatttca----gataacgatctcac 35670759  T
Q  207 atttatgttcatcaatccaacgcatatacccac 239  Q
    ||||||||||||||||||||| |||||| ||||    
T  35670760 atttatgttcatcaatccaacacatatatccac 35670792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 33 - 226
Target Start/End: Original strand, 28266950 - 28267144
Alignment:
Q  33 ccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatc-ccgccacttaggcaaccagacagaaagtaataacacaacatc 131  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  28266950 ccgccactaaggcacaccaaaaatgcttatgtcatgataataaaaatagatgcaatctccgccacttaggcaaccacacagaaagtaataacacaacatc 28267049  T
Q  132 ttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatctgacatttatgttcatcaatccaa 226  Q
     | ||||||||||||||||||||||||||| |||| ||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  28267050 atgtacatgacaaaagaaatctttcataaagggctcatttcccttcttattattttagttcgataacgatctcacatttatgttcatcaatccaa 28267144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 12774229 - 12774442
Alignment:
Q  32 cccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatccc-gccacttaggcaaccagacagaaagtaataacacaacat 130  Q
    |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||| |||||||    
T  12774229 cccgccactaaggcacaccacaaatgcttatgtcatgataataaaaacagatgcaatccccgccacttaggcaaccacacagaaagtaataatacaacat 12774328  T
Q  131 cttatacatgacaaaagaaatctttcataaaaggc-----ttatttctcttcttattatttcagttcgataacgatctgacatttatgttcatcaatcca 225  Q
    | | |||||||||||||||||||||||||||||||     | ||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||    
T  12774329 catgtacatgacaaaagaaatctttcataaaaggctcatttaatttctcttattattattttagttcgataacgatctcacatttatgttcatcaatcca 12774428  T
Q  226 acgcatatacccac 239  Q
    |  |||||||||||    
T  12774429 aaacatatacccac 12774442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 203
Target Start/End: Original strand, 41340068 - 41340233
Alignment:
Q  36 ccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaatcccgcca-cttaggcaaccagacagaaagtaataacacaacatctta 134  Q
    |||||||||||||| ||||||||  || | |||| |||||||||| ||||||||||  || ||||| |||||| ||||||| ||||| |||| |||        
T  41340068 ccactaaggcacaccaaaaatgcacatattatgagaataaaaatatatgcaatccccacaacttagacaaccacacagaaaataataccacatcatgc-- 41340165  T
Q  135 tacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttcgataacgatct 203  Q
     ||| ||||||| ||||||||||||||| ||||||||||||| |||||||||| |||||||||| ||||    
T  41340166 -acacgacaaaaaaaatctttcataaaaagcttatttctcttattattatttctgttcgataacaatct 41340233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 3189246 - 3189363
Alignment:
Q  7 gcaccacagagaattataagtttaa---cccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggc 102  Q
    |||||||  ||||||||||||||||   |||||||||||||||||| |||||||| |||||||||| |||  ||||||||||||| ||||||||||||||    
T  3189246 gcaccaccaagaattataagtttaattacccgccactaaggcacaccaaaaatgcatatgtcatgagaat-caaatagatgcaatccccgccacttaggc 3189344  T
Q  103 aaccagacagaaagtaata 121  Q
    ||||| |||||||||||||    
T  3189345 aaccacacagaaagtaata 3189363  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 22635850 - 22635958
Alignment:
Q  18 aattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaaccagacagaaag 116  Q
    ||||||||||||||||||||| ||| |||| | |||||||| |||||||||| |||  ||||||||||||| ||||||||||||||||||| ||||||||    
T  22635850 aattataagtttaacccgccattaaagcactccaaaaatgcatatgtcatgagaat-caaatagatgcaatccccgccacttaggcaaccacacagaaag 22635948  T
Q  117 taataacaca 126  Q
    ||||| ||||    
T  22635949 taataccaca 22635958  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 13652926 - 13652750
Alignment:
Q  9 accacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaacca 107  Q
    |||||| ||||| |||||||||||||||||| |||||||||   |||| | ||||||| |||||||||  |||||||||| ||||||||| |||||| ||    
T  13652926 accacaaagaataataagtttaacccgccacaaaggcacac--caaatacatatgtcacgataataaaggtagatgcaatccccgccactaaggcaatca 13652829  T
Q  108 gacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctta-tttctcttcttattattt 186  Q
     ||| ||| ||||| ||||  ||| |  |||||||||||||  |||| ||| |||| |||| ||||||||||||||||||    
T  13652828 cacaaaaaataatagcacattatcatgcacatgacaaaagaggtcttccat-aaagtcttattttctcttcttattattt 13652750  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 13661051 - 13660875
Alignment:
Q  9 accacagagaattataagtttaacccgccactaaggcacacaaaaaatgcttatgtcatgataataaaaatagatgcaat-cccgccacttaggcaacca 107  Q
    |||||| ||||| |||||||||||||||||| |||||||||   |||| | ||||||| |||||||||  |||||||||| ||||||||| |||||| ||    
T  13661051 accacaaagaataataagtttaacccgccacaaaggcacac--caaatacatatgtcacgataataaaggtagatgcaatccccgccactaaggcaatca 13660954  T
Q  108 gacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggctta-tttctcttcttattattt 186  Q
     ||| ||| ||||| ||||  ||| |  |||||||||||||  |||| ||| |||| |||| ||||||||||||||||||    
T  13660953 cacaaaaaataatagcacattatcatgcacatgacaaaagaggtcttccat-aaagtcttattttctcttcttattattt 13660875  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 42900030 - 42900117
Alignment:
Q  104 accagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagtt 191  Q
    |||| ||||||||||||||||||  | | |  || ||||||| || || || |||||||| |||||||||||||||||||||| ||||    
T  42900030 accacacagaaagtaataacacattaacctgcacctgacaaatgagattttccataaaagtcttatttctcttcttattattttagtt 42900117  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 197
Target Start/End: Original strand, 7336534 - 7336634
Alignment:
Q  93 ccacttaggcaaccagacagaaagtaataacacaacatcttatacatgacaaaagaaatctttcataaaaggcttatttctcttcttattatttcagttc 192  Q
    |||||||||||| || ||||||| ||||| |||| |||   | ||| ||||||||||||||||||| |||  ||||||||||||| ||||||||  ||||    
T  7336534 ccacttaggcaatcacacagaaaataataccacatcat---acacacgacaaaagaaatctttcatgaaa-acttatttctcttcctattatttatgttc 7336629  T
Q  193 gataa 197  Q
    |||||    
T  7336630 gataa 7336634  T

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