View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_153 (Length: 233)
Name: NF1358_low_153
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_153 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 6517018 - 6516792
Alignment:
| Q |
1 |
aatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactcaggatcaatgtagcaaaatgttccagct |
100 |
Q |
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| T |
6517018 |
aatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactcaggatcaatgtagcaaaatgttccagct |
6516919 |
T |
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| Q |
101 |
gcacctgtcatgcgatattgagtggttttgttggctatcgaagcaggaacgagtcgcgccaaaccaacatcactgatcttgctaacgtagtttttgtcta |
200 |
Q |
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| T |
6516918 |
gcgcctgtcatgcgatattgagtggttttgttggctattgaagcaggaacgagtcgcgccaaaccaacatcactgatcttgctaacgtagtttttgtcta |
6516819 |
T |
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| Q |
201 |
agagaatgtttcctggtttcatctcac |
227 |
Q |
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| T |
6516818 |
agagaatgtttcctggtttcatatcac |
6516792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 23 - 219
Target Start/End: Complemental strand, 42674145 - 42673949
Alignment:
| Q |
23 |
aatgaaaatatatctgatttcacacccaataatccagtttgttgatactcaggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattgag |
122 |
Q |
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| T |
42674145 |
aatgaatatatgtctgattttacgcccaatagtcctgtttgttgatactccggatcaatataaaaaaatgttccggctgcatttgtcttgtgatattcgg |
42674046 |
T |
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| Q |
123 |
tggttttgttggctatcgaagcaggaacgagtcgcgccaaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggttt |
219 |
Q |
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| T |
42674045 |
tagttttgttttctacagaaggtggaacaagccttgccaaaccaacatcgctgatcttgcttacgtagtttctgtctaagagaatgtttgctggttt |
42673949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 50439287 - 50439406
Alignment:
| Q |
1 |
aatttgtagcaaaatcataccaaatgaaaatatatctgatttcacacccaataatccagtttgttgatactcaggatcaatgtagcaaaatgttccagct |
100 |
Q |
| |
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|||||| || ||||| || |||| |||| ||| ||||||||||||||| || | ||| ||||| |||||||||||||| || || || |||||||| ||| |
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| T |
50439287 |
aatttgaaggaaaatgattccaagtgaatatacatctgatttcacacctaacattcctgtttgctgatactcaggatctatataacagaatgttcctgct |
50439386 |
T |
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| Q |
101 |
gcacctgtcatgcgatattg |
120 |
Q |
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| | |||||||||||||| |
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| T |
50439387 |
gttgccgtcatgcgatattg |
50439406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 48235715 - 48235755
Alignment:
| Q |
59 |
gtttgttgatactcaggatcaatgtagcaaaatgttccagc |
99 |
Q |
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| T |
48235715 |
gtttgttgatactcgggatcaatataacaaaatgttccagc |
48235755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 3686683 - 3686625
Alignment:
| Q |
161 |
aaaccaacatcactgatcttgctaacgtagtttttgtctaagagaatgtttcctggttt |
219 |
Q |
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| T |
3686683 |
aaaccaacatcacttattttgctaacaaaatttttgtctaagagaatgttggctggttt |
3686625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 120
Target Start/End: Complemental strand, 3686780 - 3686724
Alignment:
| Q |
64 |
ttgatactcaggatcaatgtagcaaaatgttccagctgcacctgtcatgcgatattg |
120 |
Q |
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||||||||| ||||||||||| || |||||||||||||| | |||||| ||||||| |
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| T |
3686780 |
ttgatactctggatcaatgtaacataatgttccagctgcttcagtcatgtgatattg |
3686724 |
T |
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