View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_178 (Length: 201)
Name: NF1358_low_178
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_178 |
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Alignment Details
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 40616943 - 40616835
Alignment:
| Q |
1 |
tactcaagtagtggctaatatatataattaataagactaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattttgttggtcc |
100 |
Q |
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| T |
40616943 |
tactcaagtagtggctaatatatataattaataagactaagcttaatttgcataaggtaaaattaagcttgtgtgtgttatttcgtcattttgttggtcc |
40616844 |
T |
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| Q |
101 |
tttgcttct |
109 |
Q |
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|||| |||| |
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| T |
40616843 |
tttgtttct |
40616835 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 40610406 - 40610364
Alignment:
| Q |
29 |
taataagactaagcttaatttgcataaggtaaaattaagcttg |
71 |
Q |
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|||||||| |||||||||||||||||||| |||||||||||| |
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| T |
40610406 |
taataagaacaagcttaatttgcataaggttaaattaagcttg |
40610364 |
T |
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