View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_2 (Length: 816)
Name: NF1358_low_2
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 365 - 810
Target Start/End: Original strand, 36085651 - 36086096
Alignment:
| Q |
365 |
atcagtaaaacttgcctatcaaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaataggga |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085651 |
atcagtaaaacttgcctatcaaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaataggga |
36085750 |
T |
|
| Q |
465 |
atctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagatt |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085751 |
atctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagatt |
36085850 |
T |
|
| Q |
565 |
cgaaatgatgtccaagttaacattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataataagaaacacaaagtt |
664 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085851 |
cgaaatgatgtccaagttaacattctacatataacatcatgcaaaagatataatatttccaggaatcagtcatcaaagttataataagaaacacaaagtt |
36085950 |
T |
|
| Q |
665 |
caaaccaatgatcataataaaaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaatccactcaccacaa |
764 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36085951 |
caaaccaatgatcataataaaaaagagagacataaacaatccgaaacaacagaagaacctacctgcatgatcaagctcacgtaaaatccactcaccacaa |
36086050 |
T |
|
| Q |
765 |
gagatctcattgaaacagaatgttccttagaagtaagaataatcta |
810 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36086051 |
gagatctcattgaaacagaatgttccttagaagtaagaagaatcta |
36086096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 50 - 366
Target Start/End: Original strand, 36083823 - 36084136
Alignment:
| Q |
50 |
gcatggcttctcaaacatcttctttttgccctttgtgaacttgaacttccaaagtaagtagtaatnnnnnnnncttatagggcgcatggcttctcaaaca |
149 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
36083823 |
gcatggcttctcaaacatcttctttttgccctttgtgaacttgaacttccaaagtaagtagtaataaaagaa-cttatagggcgcatggcttctcaaaca |
36083921 |
T |
|
| Q |
150 |
tttttctattgtttgaggcaaaagcttctcaatcatcttaaagaagattcatacaaataaaattttaaaatgtgatgattggcgtaagtgtcacttccta |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083922 |
tttttctattgtttgaggcaaaagcttctcaatcatcttaaagaagattcatacaaataaaattttaaaatgtgatgattggcgtaagtgtcacttccta |
36084021 |
T |
|
| Q |
250 |
tgnnnnnnnntagtgaaaaagaactcttatttaggaatgagaacaagatacacaattcaaatgagatatattttttcatagatttattaataaacttctc |
349 |
Q |
| |
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|| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36084022 |
tg-aaaaaaataatgaaaaagaactctta-ttaggaatgagaacaagatacacaattcaaatgagatatattttttcatagatttattaataaacttttc |
36084119 |
T |
|
| Q |
350 |
ttatcatttaagaatat |
366 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
36084120 |
ttatcatttaagaatat |
36084136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 36069633 - 36069733
Alignment:
| Q |
134 |
catggcttctcaaacatttttctattgtttgaggcaaaagcttctcaatcatcttaaagaagattcatacaaataaaattttaaaatgtgatgattggcg |
233 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| |||||||||| | |||||| ||| ||||||||||||||||| |
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| T |
36069633 |
catggcttctcaaacattttt-tattgtttgaggcaaaaacttctcaaacatcttaaa-aagattcatatacataaaacttttaaatgtgatgattggcg |
36069730 |
T |
|
| Q |
234 |
taa |
236 |
Q |
| |
|
||| |
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|
| T |
36069731 |
taa |
36069733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 289 - 363
Target Start/End: Original strand, 36069776 - 36069851
Alignment:
| Q |
289 |
agaacaagatacacaattcaaatgagatatattttttcatagatttattaat-aaacttctcttatcatttaagaa |
363 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||||| ||| |||||| |||| ||||||| |
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|
| T |
36069776 |
agaacaagatacacaattaaaatgagatatattttatcatagatttattaataaaaattctctcatcagttaagaa |
36069851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 36083760 - 36083807
Alignment:
| Q |
67 |
tcttctttttgccctttgtgaacttgaacttccaaagtaagtagtaat |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
36083760 |
tcttctttttgccctttgtgaacttgaacttccaaagtaagcagtaat |
36083807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 210; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 373 - 614
Target Start/End: Complemental strand, 40730349 - 40730108
Alignment:
| Q |
373 |
aacttgcctatcaaattcctgtatttagcaaacttaaacattcaaataagtatatcacacacgcaaaggatgaaagacaaacacaatagggaatctgacc |
472 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40730349 |
aacttgcctatcaaattcctgcatttgacaaacttaaacattcaaataaatatatcacacacgcaaaggatgaaagacaaacacaataggcaatctgacc |
40730250 |
T |
|
| Q |
473 |
tcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatcctaaaagattcatataattagattcgaaatga |
572 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40730249 |
tcgttcatatcgtgtgccatgtttttcaaagtatccaatccttctgcaatcacatccaaaccttcatcctaaaagattcatataattagatttgaaatga |
40730150 |
T |
|
| Q |
573 |
tgtccaagttaacattctacatataacatcatgcaaaagata |
614 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
40730149 |
tgtccaagttaacattctacatataacatcatgcaaaagata |
40730108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 467 - 543
Target Start/End: Original strand, 28511073 - 28511149
Alignment:
| Q |
467 |
ctgacctcattcatatcgtgtgccatgtttttcaaagtatccaatccttctacaatcacatccaaaccttcatccta |
543 |
Q |
| |
|
|||||||||||||| || || ||||||| |||||||||||||||||||||| |||||| ||||||||||| |||||| |
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|
| T |
28511073 |
ctgacctcattcatgtcatgcgccatgtctttcaaagtatccaatccttctgcaatcatatccaaaccttgatccta |
28511149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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