View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_20 (Length: 543)
Name: NF1358_low_20
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 249 - 532
Target Start/End: Original strand, 40572443 - 40572726
Alignment:
| Q |
249 |
tggagggatcaattattacatactacagtacgatgccaaaaacgtcccatgcttccttcgtactgtaataatttcacctatctatagaaatataaccaga |
348 |
Q |
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| T |
40572443 |
tggagggatcaattattacatactacagtacgatgccaaaaacgtcccatgctcccttcgtactgtaattatttcacctatctatagaaatataactaga |
40572542 |
T |
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| Q |
349 |
aaacttgctctcatcagactccaagaggcagagctacttcaaagcggtactactcatctccaaagccagattgttgtcgttgtcaacaaataatagcaca |
448 |
Q |
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| T |
40572543 |
aaacttgctctcatcagactccaagaggcagagctacttcaaagcggtactactcatctccaaagcgagattgttgtagttgtcaacaaataatagcaca |
40572642 |
T |
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| Q |
449 |
gtagccatttgtcattacatggcgtcaccaaatgggatggtgaaagaaagagaaacgatataagggtaagggatttgggttcat |
532 |
Q |
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| T |
40572643 |
gtagccatttgtcattacatggcgtcaccaaatgggatggtgaaagaaagagaaacgatataagggtaagggatttgggttcat |
40572726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 39 - 232
Target Start/End: Original strand, 40572266 - 40572459
Alignment:
| Q |
39 |
aatatggatattggagaattggcaaatggaaaaggggaacaaccaaaaagaaaccaccgtacatgaattcggtttataagtnnnnnnnntgaatgattgg |
138 |
Q |
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| T |
40572266 |
aatatggatattggagaattggcaaatggaaaaggggaacaaccaaaaagaaaccaccgtacatgaattcggtttataagtaaaaaaaatgaatgattgg |
40572365 |
T |
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| Q |
139 |
caagaaaatcttgtgaggtttgctgatggatatcttcttgaatagcagctttagtttttgagtaatcatacaaaatttggagggatcaattatt |
232 |
Q |
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| T |
40572366 |
caagaaaatcttgtgaggtttgctgatggatatcttcttgaatagcagctttagtttttgagtaatcatacaaaatttggagggatcaattatt |
40572459 |
T |
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