View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_22 (Length: 536)

Name: NF1358_low_22
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_22
NF1358_low_22
[»] chr8 (20 HSPs)
chr8 (124-503)||(25489168-25489547)
chr8 (124-286)||(25646202-25646369)
chr8 (159-286)||(24913783-24913915)
chr8 (124-251)||(25603826-25603951)
chr8 (124-223)||(25799544-25799640)
chr8 (388-499)||(25385301-25385413)
chr8 (124-186)||(25694637-25694699)
chr8 (28-81)||(25489590-25489643)
chr8 (444-503)||(25321367-25321426)
chr8 (124-197)||(25321934-25322004)
chr8 (28-81)||(25694742-25694795)
chr8 (184-273)||(25569119-25569208)
chr8 (28-81)||(25646412-25646465)
chr8 (33-81)||(24913658-24913706)
chr8 (357-452)||(25603303-25603397)
chr8 (28-81)||(25322047-25322098)
chr8 (28-81)||(25604000-25604053)
chr8 (209-257)||(25321889-25321937)
chr8 (28-65)||(25799658-25799695)
chr8 (285-313)||(25385414-25385442)
[»] scaffold0070 (4 HSPs)
scaffold0070 (159-286)||(17826-17951)
scaffold0070 (444-503)||(18458-18517)
scaffold0070 (36-81)||(17704-17749)
scaffold0070 (285-313)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (238-283)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (238-283)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 124 - 503
Target Start/End: Complemental strand, 25489547 - 25489168
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  224 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcccga 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25489447 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcacga 25489348  T
Q  324 aatcaacaagcaaaaaagatgtttnnnnnnnnncaattgcttccagtaattaaactctttgatgatatatcatgaatagttgttgctgcttttgtctctt 423  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25489347 aatcaacaagcaaaaaagatgtttaaaaaaaaacaattgcttccagtaattaaactatttgatgatatatcatgaatagttgttgctgcttttgtctctt 25489248  T
Q  424 gacatcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtt 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489247 gacatcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtt 25489168  T

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Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 124 - 286
Target Start/End: Complemental strand, 25646369 - 25646202
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  224 attgaatatttctgtcttttatgtcatatcaggtggtg-----tctacttactaggttgctacataat 286  Q
     ||||||||||||||||||||||| ||| |||||||||     |||||||||||||||||||||||||    
T  25646269 gttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat 25646202  T

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Target: chr8; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 24913783 - 24913915
Alignment:
Q  159 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 258  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  24913783 ttgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagtttttggttgaatatttctgtcttttatgttatagcaggtg 24913882  T
Q  259 gt-----gtctacttactaggttgctacataat 286  Q
    ||     ||||||||||||||||||||||||||    
T  24913883 gtgtctagtctacttactaggttgctacataat 24913915  T

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Target: chr8; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 124 - 251
Target Start/End: Complemental strand, 25603951 - 25603826
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagt-tttt 222  Q
    ||||||||||||||||||||   ||||| ||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||||| ||||    
T  25603951 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagtttttt 25603855  T
Q  223 gattgaatatttctgtcttttatgtcata 251  Q
    | ||||||||||||| ||||| |||||||    
T  25603854 ggttgaatatttctgccttttttgtcata 25603826  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 25799640 - 25799544
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttg 223  Q
    ||||||||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  25799640 ggtgcagtctttggaggaga---gtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttg 25799544  T

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Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 388 - 499
Target Start/End: Complemental strand, 25385413 - 25385301
Alignment:
Q  388 atatatcatgaatagttgttgctgcttttgtctcttgaca--tcttttacaaaaattcacaaataaaaagtaaatttcaaatgcatgttggtccattcac 485  Q
    |||||||||| || ||||||||||| |||||||| ||| |  | ||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  25385413 atatatcatgcattgttgttgctgcctttgtctc-tgaaattttttttacaaaaattcacaaagaaaaactaaatttcaaatgcatggtggtccattcac 25385315  T
Q  486 ctttggacgattct 499  Q
    ||||||| ||||||    
T  25385314 ctttggatgattct 25385301  T

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Target: chr8; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaa 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

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Target: chr8; HSP #8
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25489643 - 25489590
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25489643 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

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Target: chr8; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 444 - 503
Target Start/End: Complemental strand, 25321426 - 25321367
Alignment:
Q  444 acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtt 503  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25321426 acaaataaaaactaaatttcaaatgcatgttggtccattcacctttggatgattctagtt 25321367  T

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Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 197
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  124 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttcta 197  Q
    ||||||||||||||||||||   ||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  25322004 ggtgcagtctttggaggaga---gtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

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Target: chr8; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25694795 - 25694742
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25694795 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

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Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 184 - 273
Target Start/End: Complemental strand, 25569208 - 25569119
Alignment:
Q  184 gaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtggtgtctacttactag 273  Q
    ||||||||||||||||||||||||  ||||||| |||||  ||| |||||| | |||| | ||||||| ||||||||||||| |||||||    
T  25569208 gaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtctagttactag 25569119  T

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Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25646465 - 25646412
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    |||| |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  25646465 cacaaaagcatgtaaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 24913658 - 24913706
Alignment:
Q  33 aagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||    
T  24913658 aagcatgtaaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 357 - 452
Target Start/End: Complemental strand, 25603397 - 25603303
Alignment:
Q  357 caattgcttccagtaattaaactctttgatgatatatcatgaatagttgttgctgcttttgtctcttgacatcttttacaaaaattcacaaataaa 452  Q
    ||||| |||| ||||||||||||||  |||||||||||||| || |||||| | || ||||||||  |||||| ||||||||||||| | ||||||    
T  25603397 caatttcttctagtaattaaactctaagatgatatatcatgcattgttgttccggcctttgtctc-cgacatcgtttacaaaaattcgctaataaa 25603303  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25322098 - 25322047
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||| ||||||| ||||||||||||  ||||||||||||||    
T  25322098 cacagaagcatgtaaattgtgtgtactgtatccattta--ttgtatcccctctc 25322047  T

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Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 25604053 - 25604000
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||||||||||| | ||||||| ||| |||||| |||||||    
T  25604053 cacagaagcatgtaaatcgtgtgtactatatccatatatattgtataccctctc 25604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 25321937 - 25321889
Alignment:
Q  209 tctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggt 257  Q
    ||||||||||||||| |||||||| |||| ||||||||||||| |||||    
T  25321937 tctaatcagtttttggttgaatatatctgccttttatgtcatagcaggt 25321889  T

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Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 25799695 - 25799658
Alignment:
Q  28 cacagaagcatgtaaatcgtgtgtattgtatccattta 65  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  25799695 cacagaagcatgtaaatggtgtgtactgtatccattta 25799658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 25385442 - 25385414
Alignment:
Q  285 atcttgtgtcaaaagtacaaaaatatatt 313  Q
    |||||||||||||||||||||||||||||    
T  25385442 atcttgtgtcaaaagtacaaaaatatatt 25385414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 159 - 286
Target Start/End: Original strand, 17826 - 17951
Alignment:
Q  159 ttgactcattgtgtaagaataggaagaaaagatcttctattactgaactgtctaatcagtttttgattgaatatttctgtcttttatgtcatatcaggtg 258  Q
    |||||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||| || | ||||| |||||||||||| ||| ||||||    
T  17826 ttgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagtttttggttaattatttttgtcttttatgttatagcaggtg 17923  T
Q  259 gtgtctacttactaggttgctacataat 286  Q
    ||||||||||||||||||||||||||||    
T  17924 gtgtctacttactaggttgctacataat 17951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 444 - 503
Target Start/End: Original strand, 18458 - 18517
Alignment:
Q  444 acaaataaaaagtaaatttcaaatgcatgttggtccattcacctttggacgattctagtt 503  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  18458 acaaagaaaaactaaatttcaaatgcatgttggtccattcacctttggatgattttagtt 18517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 17704 - 17749
Alignment:
Q  36 catgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 81  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||    
T  17704 catgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 313
Target Start/End: Original strand, 18361 - 18389
Alignment:
Q  285 atcttgtgtcaaaagtacaaaaatatatt 313  Q
    |||||||||||||||||||||||||||||    
T  18361 atcttgtgtcaaaagtacaaaaatatatt 18389  T

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Target: scaffold0526 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 11146 - 11191
Alignment:
Q  238 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 283  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11146 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11191  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 283
Target Start/End: Original strand, 11971234 - 11971279
Alignment:
Q  238 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 283  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11971234 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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