View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_28 (Length: 512)
Name: NF1358_low_28
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 23975379 - 23975059
Alignment:
| Q |
13 |
aatatcaatttaaacctatgaagcatggatggagtttttgggactaac----gcatctcaaaatctagctcatgtattgtttcttacaaagtgatcactt |
108 |
Q |
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| T |
23975379 |
aatatcaatttaaacctatgaagtatggatcgagtttctgtgactaactcaatcatctcaaaatctagctaatgtattgtttcttacaaagtgatcactt |
23975280 |
T |
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| Q |
109 |
acgattttcagaacaattatagagatcacccggcaatccattgattgtataggcatcagatgaatttggagcaccaccggtggcgagtgcttcattctca |
208 |
Q |
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| T |
23975279 |
acgatttttggaacaattatagagatcaccgggcaatccattgattgtgtaggcatcagatgaatttggagcgccaccggtgacgagagcttcattctca |
23975180 |
T |
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| Q |
209 |
acgtcaacaacattagcatcataccagtcacctatatttaaagacatataacatttgttatggaaaatatttcaaatttcaataataattgcaaattttg |
308 |
Q |
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| T |
23975179 |
acgtcaacaacattagcatcataccagtcacctatatttaaagacatataacatttgttatggaaaatatttcaaatttca--aataattgcaaattttg |
23975082 |
T |
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| Q |
309 |
taattatattcctaggattcatg |
331 |
Q |
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||||||||||||||||||||||| |
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| T |
23975081 |
taattatattcctaggattcatg |
23975059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 399 - 456
Target Start/End: Complemental strand, 23974991 - 23974934
Alignment:
| Q |
399 |
tttattttattagtttgaatcaatatgggtattttaaagcgtaaaacactcatacact |
456 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23974991 |
tttattttattagtaggaatcaatatcggtattttaaagcgtaaaacactcatacact |
23974934 |
T |
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