View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_3 (Length: 747)
Name: NF1358_low_3
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 231 - 711
Target Start/End: Original strand, 21937724 - 21938226
Alignment:
| Q |
231 |
ttaaatttaattgagttatacatcttaataatatttaagaggtatctaatgaattttaaggagagagtatcaatataacccctttgatttgggattccaa |
330 |
Q |
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| T |
21937724 |
ttaaatttaattgagttatacatcttaaaaatatttaagaggtatctaatgaattttaaggagagagtatcaatataacccctttgatttgggattccaa |
21937823 |
T |
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| Q |
331 |
cttgagagaatctaaattcaattttttactacaaatataaattgaacatattaacatattattcaaaatg-------------gagataagagaagagtg |
417 |
Q |
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| T |
21937824 |
cttgagagaatccaaatacaattttttactacaaatataaattgaacatattaacatattattcaaaatggattttagctattgacataagagaagagtg |
21937923 |
T |
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| Q |
418 |
gaatgtagtcattgaaataaaatgaagtagaagagtttttaataggatatagagaagtttaaaagtgagatttaattttaaaatacccaaaaatatga-- |
515 |
Q |
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| T |
21937924 |
gaatatagtcattgaaataaaatgaagtagaagagtttttaataggatatagagaagtttaaaagtgagatttaattttaaaatacccaaaaatatgatt |
21938023 |
T |
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| Q |
516 |
------nnnnnnnnnggagagaatccattcccactagtactaatattctaagctttatctccatttgtcatct-nnnnnnnnnnnctccatttgtcaggt |
608 |
Q |
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| T |
21938024 |
ttttttatttttttttgagagaatccattcccactagtactaatattctaagctttatctccatttgtcatctataaaaaaaaaactccatttgtcaggt |
21938123 |
T |
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| Q |
609 |
tttgtaacttgtcagagagtgctttgacccattctgatttaatttaagcacaaaataacaaagtggtcagaaactagtatccaattgtccaggtaaagtg |
708 |
Q |
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| T |
21938124 |
tttgtaacttgtcagagagtgctttgacccattctgatttaatttaagcacaaaataacaaagtgggcagaaactagtatccaattgtccaagtaaagtg |
21938223 |
T |
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| Q |
709 |
gtg |
711 |
Q |
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| T |
21938224 |
gtg |
21938226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 37 - 236
Target Start/End: Original strand, 21937491 - 21937689
Alignment:
| Q |
37 |
cttgcttattgaagacaaatgtggtacgtttgattgatagtgacaccacactcttagcatatcaaaccagattcaatagcaattactaaaatagtaattt |
136 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21937491 |
cttgcttattgaagacaaatgtggtgcgtttgattgatagtgacaccacactcttagcatatcaaaccagattcaatagcaattactaaaatagtaattt |
21937590 |
T |
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| Q |
137 |
aaactctagaattttatgttacaatttaaaatttagtaagcaatggggaaaaggagannnnnnnngttcttcttaaatttgaatcctatcgtgtttaaat |
236 |
Q |
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| T |
21937591 |
aaactctagaattttatgttacaatttaaaatttagtaagcaatggggaaaaggaga-tttttttgttcttcttaaatttgaatcctatcgtgtttaaat |
21937689 |
T |
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