View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_30 (Length: 505)
Name: NF1358_low_30
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-178; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 115 - 494
Target Start/End: Original strand, 43268905 - 43269286
Alignment:
| Q |
115 |
gtcaaaagaaccagaaattgataacttagcttctcgggttccatgtttttagctagaaataacggaaacagctacaatccagtgagcattatcagagaga |
214 |
Q |
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| T |
43268905 |
gtcaaaagcaccagaaattgataacttagcttctcgggttccatgtttttagctagaaataacggaaacaactacaatccagggagcattatcagagaga |
43269004 |
T |
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| Q |
215 |
aagtaatgcatggactagctacttgaaaacaccacaaattacgaggattttgaccataaatggggacaccgcatacaccaagcagcaatgaaaaacacgc |
314 |
Q |
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| T |
43269005 |
aagtaatgcatggactagctacttgaaaacaccacaaattacgaggattttgaccataaatggggacaccacatacatcaagcagcaatgaaaaacacgc |
43269104 |
T |
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| Q |
315 |
ac---actacccgtaagtttaaccgaacaacgacaaccaaaggctagtctttgtaggccacattcatggccaatagaattacgtgctctatcattttgtc |
411 |
Q |
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| T |
43269105 |
acactactacccataagtttagccgaacaacgacaatc-aaggctagtatttgtaggccacattcatggccaatagaattacgtgctctatcattttgtc |
43269203 |
T |
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| Q |
412 |
tataaatatcacttggaaatcttgttttaaacacttcaattaaccaaactattatttttccaataggatgctttgagcttcat |
494 |
Q |
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| T |
43269204 |
tataaatatcacttggaaatcttgttttaaacacttcaattaaccaaactatttttttttcaataggatgctttgagcttcat |
43269286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 401
Target Start/End: Original strand, 40408786 - 40408832
Alignment:
| Q |
355 |
ctagtctttgtaggccacattcatggccaatagaattacgtgctcta |
401 |
Q |
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| T |
40408786 |
ctagtctttgtaagccacattcatagccaataaaattatgtgctcta |
40408832 |
T |
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