View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_35 (Length: 473)
Name: NF1358_low_35
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_35 |
 | |
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| [»] chr4 (9 HSPs) |
| |
|
| [»] scaffold0190 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 194 - 473
Target Start/End: Original strand, 7606108 - 7606387
Alignment:
| Q |
194 |
ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattttata |
293 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7606108 |
ttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata |
7606207 |
T |
|
| Q |
294 |
tcctctacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattattgggcatg |
393 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7606208 |
tccactacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattattggacatg |
7606307 |
T |
|
| Q |
394 |
ctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606308 |
ctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
7606387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 190 - 473
Target Start/End: Original strand, 7636932 - 7637218
Alignment:
| Q |
190 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattt |
289 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| |||||||| | | || ||||||||||| |
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|
| T |
7636932 |
tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctattccggcaaataccgtaataagtccatttattt |
7637031 |
T |
|
| Q |
290 |
tatatcctctacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattattggg |
389 |
Q |
| |
|
||||||| ||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
7637032 |
tatatccactacgaactgccagaggctttccccatccaaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattttttac |
7637131 |
T |
|
| Q |
390 |
catg---ctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
7637132 |
catgttcttagcaagcctaaaaaagcttggatttcttaaccaagactcgtaatgattcttcaacttctcatcagtgtgtgaagcaat |
7637218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 190 - 473
Target Start/End: Original strand, 7615118 - 7615401
Alignment:
| Q |
190 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattt |
289 |
Q |
| |
|
||||||||||||||||||||||||| || | |||||| |||||||| || |||||||||||||||||||||||||| || | | || ||||||| || |
|
|
| T |
7615118 |
tcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaaccgtaataagtccatttcctt |
7615217 |
T |
|
| Q |
290 |
tatatcctctacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattattggg |
389 |
Q |
| |
|
||||||| ||||||||||| | ||| |||||||| || |||||||||||||||||||||||||| |||||||| ||||||| |||||||||||| || | |
|
|
| T |
7615218 |
tatatccactacgaactgccacaggctttccccaaccaaaatcattaccataaacatcaaaccacggagaactgctaatggctatgaaattattttttgc |
7615317 |
T |
|
| Q |
390 |
catgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
|||| ||| | |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
7615318 |
catgttaggatacctagcaaagcttggatttcttaaccaagactcgtagtgattcttcaacttctcatcagtgtgtgaaacaat |
7615401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 175 - 446
Target Start/End: Complemental strand, 7656403 - 7656132
Alignment:
| Q |
175 |
tccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacattta |
274 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||| ||||||||||||||||||| || | |
|
|
| T |
7656403 |
tccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaaa |
7656304 |
T |
|
| Q |
275 |
caattccatttattttatatcctctacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatat |
374 |
Q |
| |
|
| ||||||||| |||||| ||| ||||||||||| | ||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| | |
|
|
| T |
7656303 |
ccattccatttgttttatttccactacgaactgccacaggctttccccatccaaaatcattaccataaacatcaaactttggagaactgctaatggccaa |
7656204 |
T |
|
| Q |
375 |
gaaattattattgggcatgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattctt |
446 |
Q |
| |
|
||||| ||| || || |||| ||| ||||| |||| |||||||||| ||||| |||||||| | |||||| |
|
|
| T |
7656203 |
aaaattcttagtgctcaagctatcaagcctaataaagtttggatttctcaaccatgactcataatcattctt |
7656132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 190 - 303
Target Start/End: Original strand, 7628556 - 7628669
Alignment:
| Q |
190 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattt |
289 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |||| ||| || |||| |
|
|
| T |
7628556 |
tcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaaatacattaacaagtcctttcattt |
7628655 |
T |
|
| Q |
290 |
tatatcctctacga |
303 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
7628656 |
tatatccactacga |
7628669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 378 - 473
Target Start/End: Original strand, 7633443 - 7633541
Alignment:
| Q |
378 |
attattattgggcatgctagcaaccctaacaaagcttggatttct---taaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
7633443 |
attattattggtcatgctagcaaccctaacaaagcctggatttcttcttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaat |
7633541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 7628708 - 7628772
Alignment:
| Q |
409 |
aagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
7628708 |
aagcttggattttttaaccaagactcgtagtgattcttcaacatctcatcagtgtgtgaagcaat |
7628772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 366
Target Start/End: Original strand, 39097703 - 39097738
Alignment:
| Q |
331 |
tcattaccataaacatcaaaccatggagaactacta |
366 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39097703 |
tcattaccataaacatcaaaccttggagaactacta |
39097738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 365
Target Start/End: Original strand, 39088014 - 39088060
Alignment:
| Q |
319 |
ccccatccgaaatcattaccataaacatcaaaccatggagaactact |
365 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
39088014 |
ccccaaccaaaatcattatcataaacatcaaaccttggagaactact |
39088060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 353
Target Start/End: Original strand, 8102149 - 8102486
Alignment:
| Q |
16 |
atcaatagcgttttcccccaaaaaagtttaatttaacaaaagaaagactagaacatcgttaatttactacggattacaacacacaaattcaagaatatga |
115 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
8102149 |
atcaatagcgttttccccgaaaaaagttttatttaacaaaagaaagactagaacatcgttaatttattatggattacaacacacaaattcaagaatatga |
8102248 |
T |
|
| Q |
116 |
actaaaatagtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcatttcccattgcctccaaaatctt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8102249 |
actaaaatagtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagttcatgaaaacaggatcatttcccattgcctccaaaatctt |
8102348 |
T |
|
| Q |
216 |
gtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattttatatcctctacgaactgctataggt |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| || ||||| ||| || |||||||| | ||| |
|
|
| T |
8102349 |
gtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactgccactggt |
8102448 |
T |
|
| Q |
316 |
tttccccatccgaaatcattaccataaacatcaaacca |
353 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
8102449 |
tttccccatccaaaattattgccataaacatcaaacca |
8102486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 125 - 353
Target Start/End: Complemental strand, 40147681 - 40147453
Alignment:
| Q |
125 |
gtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagtccatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaag |
224 |
Q |
| |
|
||||||||| |||||||||| |||||| ||| ||||| || |||| |||||||| || | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40147681 |
gtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaag |
40147582 |
T |
|
| Q |
225 |
acatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattttatatcctctacgaactgctataggttttccccat |
324 |
Q |
| |
|
||| ||||||| |||||| |||||||||||| |||||||||||||| | | |||||| ||||||||| ||| || |||||||| | ||||| ||||||| |
|
|
| T |
40147581 |
acacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcgaactgccacaggttctccccat |
40147482 |
T |
|
| Q |
325 |
ccgaaatcattaccataaacatcaaacca |
353 |
Q |
| |
|
|| |||||||||||||||||||||||||| |
|
|
| T |
40147481 |
ccaaaatcattaccataaacatcaaacca |
40147453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 194 - 440
Target Start/End: Complemental strand, 8941983 - 8941738
Alignment:
| Q |
194 |
ttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattttata |
293 |
Q |
| |
|
|||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941983 |
ttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttattttata |
8941884 |
T |
|
| Q |
294 |
tcctctacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattattgggcatg |
393 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
8941883 |
tccactacga-ctgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggataagaaattattattggacatg |
8941785 |
T |
|
| Q |
394 |
ctagcaaccctaacaaagcttggatttcttaaccaagactcatagtg |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941784 |
ctagcaaccctaacaaagcttggatttcttaaccaagactcatagtg |
8941738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 190 - 473
Target Start/End: Complemental strand, 8936343 - 8936069
Alignment:
| Q |
190 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattt |
289 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||| |||||||| | | || ||||||| || |
|
|
| T |
8936343 |
tcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctattccggcaaatactgtaataagtccatttgctt |
8936244 |
T |
|
| Q |
290 |
tatatcctctacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattattggg |
389 |
Q |
| |
|
||||||| | |||| |||||| ||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||||| || || || |
|
|
| T |
8936243 |
tatatccaccacgacctgctacaggctttccccatccaaaatcattaccataaacatcaaaccacggagaactgctaatggctatgaaattcttttttgg |
8936144 |
T |
|
| Q |
390 |
catgctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
|||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
8936143 |
catgtta------ct---aaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatcagtgtgtaaagcaat |
8936069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 190 - 473
Target Start/End: Complemental strand, 8913840 - 8913561
Alignment:
| Q |
190 |
tcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattt |
289 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||| ||||||||||| ||| |||||||||||||||| ||||||| | | || ||||||||||| |
|
|
| T |
8913840 |
tcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctattccgacaaatactgtaataagtccatttattt |
8913741 |
T |
|
| Q |
290 |
tatatcctctacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaactactaatggatatgaaattattattggg |
389 |
Q |
| |
|
||||||| ||||||||||| | ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |
|
|
| T |
8913740 |
tatatccactacgaactgccacaggctttcccc-------atcattaccataaacatcaaactatggagaactactaatggatatgaaattagtttttac |
8913648 |
T |
|
| Q |
390 |
catg---ctagcaaccctaacaaagcttggatttcttaaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| || | |||||||||||| |
|
|
| T |
8913647 |
catgttcttagcaagcctaacaaagcttggatttcttaaccaagactcgtaatgattcttcaacttctcgtcagcgtgtgaagcaat |
8913561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 8919184 - 8919086
Alignment:
| Q |
378 |
attattattgggcatgctagcaaccctaacaaagcttggatttctt---aaccaagactcatagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
8919184 |
attattattggtcatgctagcaaccctaacaaagtctggatttcttcttaaccaagactcatagtgatttttcagcttctcattagtgtgtgaagcaat |
8919086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 434 - 473
Target Start/End: Complemental strand, 8938884 - 8938845
Alignment:
| Q |
434 |
catagtgattcttcaacttctcatccgtgtgtgaagcaat |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8938884 |
catagtgattcttcaacttctcatccgtgtgtgaagcaat |
8938845 |
T |
|
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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 198 - 362
Target Start/End: Original strand, 6500375 - 6500539
Alignment:
| Q |
198 |
cattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaatacatttacaattccatttattttatatcct |
297 |
Q |
| |
|
|||||| |||||| |||||| ||||||||| ||||||||||| |||||||||| |||| |||||||||||||| | || || |||| |||||||| | | |
|
|
| T |
6500375 |
cattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaaatacactaaccataccatctattttatttaca |
6500474 |
T |
|
| Q |
298 |
ctacgaactgctataggttttccccatccgaaatcattaccataaacatcaaaccatggagaact |
362 |
Q |
| |
|
|| |||| ||| | ||||| |||||||| |||||||||||||||| ||||||||| || ||||| |
|
|
| T |
6500475 |
ctgcgaaatgccacgggtttcccccatccaaaatcattaccataaatatcaaaccacggggaact |
6500539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 11968792 - 11968861
Alignment:
| Q |
187 |
ggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta |
256 |
Q |
| |
|
||||||||| ||| |||||||||||||||| ||||||||| |||| || ||| |||||||||||||||| |
|
|
| T |
11968792 |
ggatcatttttcatggcctccaaaatcttgtaaggaagacacacttcaaagtctatactaccttcttcta |
11968861 |
T |
|
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Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 312 - 361
Target Start/End: Original strand, 4452 - 4501
Alignment:
| Q |
312 |
aggttttccccatccgaaatcattaccataaacatcaaaccatggagaac |
361 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
4452 |
aggttttccccaaccaaaatcattaccataaacatcaaaccaaggagaac |
4501 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 256
Target Start/End: Original strand, 4319 - 4390
Alignment:
| Q |
185 |
caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttcta |
256 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
4319 |
caggatcatttctaattgcctccaaaatttcacaaggaagacatacttcaaggtccatgctaccatcttcta |
4390 |
T |
|
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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 15196416 - 15196335
Alignment:
| Q |
185 |
caggatcatttcccattgcctccaaaatcttgtgaggaagacatacttgaaggtccatactaccttcttctattccagcaaa |
266 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||| |||||||| |||| || ||||||||| ||||||||| | |||||||| |
|
|
| T |
15196416 |
cagggtcatttcccatgacctccaaaatcttgtatggaagacacacttcaaagtccatacttccttcttctttaccagcaaa |
15196335 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 15745070 - 15745016
Alignment:
| Q |
312 |
aggttttccccatccgaaatcattaccataaacatcaaaccatggagaactacta |
366 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||| || ||||||||| |
|
|
| T |
15745070 |
aggttttccccaaccaaaatcattgccataaacatcaaaccagggtgaactacta |
15745016 |
T |
|
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