View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_36 (Length: 472)
Name: NF1358_low_36
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 355
Target Start/End: Complemental strand, 44014496 - 44014155
Alignment:
| Q |
11 |
cagagagaacatcactcaacaaactcaaacacagactctctgaaatcttcttccctgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaa |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014496 |
cagagagaacatcactcaacaaactcaaacacagactctctgaaatcttcttccccgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaa |
44014397 |
T |
|
| Q |
111 |
gtttcttcttacccttcaattcttgttccccatttttcaatggggttctcagtatactctcacccttcttcgttctgatgtcatttctggtctcaccatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44014396 |
gtttcttcttacccttcaattcttgttccccatttttcaatggggttctcagtatactctcacccttcttcgttctgatgtcatttctggtctcaccatt |
44014297 |
T |
|
| Q |
211 |
gccagccttgccattcctcaggtataacacacactaacttcttacatatgtctctgatatacttgatattgaagacttgtttggtgtcgagacatactat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
44014296 |
gccagccttgccattcctcaggtataacacacactaacttcttacatatgtctccgatatacttgatattgaagacgtgt---gtgtcgagacatactat |
44014200 |
T |
|
| Q |
311 |
atttaattatttcattttgtgaaattaagacgtatctaatgtcca |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
44014199 |
atttaattatttcattttgtgaaattaagacatatctgatgtcca |
44014155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 3172739 - 3172931
Alignment:
| Q |
43 |
agactctctgaaatcttcttccctgatgatcctttacaccgtttcaaaaaccaaccatcttttacaaagtttcttcttacccttcaattcttgttcccca |
142 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||| || | |||||||||||| | || || |||||||||||||| | ||||||| | |||| || | |
|
|
| T |
3172739 |
agactctctgaaatcttttttcctgatgacccttttcatggattcaaaaaccaaacttccttcacaaagtttcttctggctcttcaatacatgtttccga |
3172838 |
T |
|
| Q |
143 |
tttttcaatggggttctcagtatactctcacccttcttcgttctgatgtcatttctggtctcaccattgccagccttgccattcctcaggtat |
235 |
Q |
| |
|
|||||||||||||| ||||||||| ||| | ||| | || || ||| | || || ||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
3172839 |
tttttcaatggggtcctcagtatagtcttaatcttttacgctccgatattatatccggtctcaccatcgccagtctcgccattcctcaggtat |
3172931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University