View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_4 (Length: 737)
Name: NF1358_low_4
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 29 - 435
Target Start/End: Complemental strand, 21833203 - 21832797
Alignment:
| Q |
29 |
agaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggattga |
128 |
Q |
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| T |
21833203 |
agaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatcttttgaagaggggacggatgagagggcgtgttggattga |
21833104 |
T |
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| Q |
129 |
ggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtcgtcgtc |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21833103 |
ggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtcctcgtc |
21833004 |
T |
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| Q |
229 |
gatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatatgaatgtgttgttgtaaccatggttttgcgaagtcgtgaaaactgtaga |
328 |
Q |
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| T |
21833003 |
gatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatttgaatgtgttgttgtaaccatggttttgcgaagtcgtgaaaactgcaga |
21832904 |
T |
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| Q |
329 |
aactgtgaacacaaaaagacggtaacgttggtgcaaaaatggtgctggcggtgacacaaaaatattagggtttggagttaggttatgtttttattgttac |
428 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832903 |
aaccgtgaacacaaaaagacggtaacgttagtgcaaaaatggtgctggcggtgacacaaaaatattagggtttggagttaggttatgtttttattgttac |
21832804 |
T |
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| Q |
429 |
gggtttg |
435 |
Q |
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| T |
21832803 |
gggtttg |
21832797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 441 - 536
Target Start/End: Complemental strand, 21832497 - 21832402
Alignment:
| Q |
441 |
ggtaacggatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
536 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832497 |
ggtaacagatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
21832402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 593 - 655
Target Start/End: Complemental strand, 21832347 - 21832285
Alignment:
| Q |
593 |
acataaaattcaacttcattcaattaggaaatggattatcggcaacacttatttctccacact |
655 |
Q |
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| T |
21832347 |
acataaaattcaacttcattcaattgggaaatggattatcggcaacacttatttctccacact |
21832285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 6417254 - 6417399
Alignment:
| Q |
61 |
gaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatg |
160 |
Q |
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|||||| ||||| |||| || ||||| ||||| |||||| ||| | || |||||||||||||||||||| |||||||| ||||||| | | | || |
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| T |
6417254 |
gaggttgagggaattaaggtttgtgaatcttttaaagaggcgacaaaggaaagggcgtgttggattgaggatagtcagtgtgaatcgaattcggttggtg |
6417353 |
T |
|
| Q |
161 |
atggagaggaattgtttggagacagcggagagaggatacaagtagc |
206 |
Q |
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| T |
6417354 |
atggagaggagttgcttggagacaagggagagaaaattcaagtagc |
6417399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 280
Target Start/End: Original strand, 6433175 - 6433220
Alignment:
| Q |
235 |
gaatttgaagatgcatttccaacagtcatcaggtaagtatgaatat |
280 |
Q |
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|||| |||||||||||| |||||||||||||||||| | ||||||| |
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| T |
6433175 |
gaatctgaagatgcattcccaacagtcatcaggtaaatttgaatat |
6433220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 45055858 - 45055773
Alignment:
| Q |
159 |
tgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtcgtcgtcgatgatgaatttgaag |
244 |
Q |
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||||||||||||| ||||||||||| |||||||| | |||||| ||| |||||||| || ||| ||||||| |||||||||| |
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| T |
45055858 |
tgatggagaggaagtgtttggagacgagggagagagactctaagtagggactattgttgttgtagtcatcgatgaggaatttgaag |
45055773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 218
Target Start/End: Original strand, 28532997 - 28533138
Alignment:
| Q |
77 |
agattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtt |
176 |
Q |
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|||| ||||||||||||||||||| | | | || |||| |||||||||||| || ||| ||||| ||||| || | || ||||||||||||| ||| |
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| T |
28532997 |
agatgggtgaaccttttgaagaggctaagtaggaaagggggtgttggattgacgagagtgagtgagaatcggaggcgtccggtgatggagaggaaccgtt |
28533096 |
T |
|
| Q |
177 |
tggagacagcggagagaggatacaagtagcgacgattgttgt |
218 |
Q |
| |
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|||| || | |||||||| | ||||| |||||| ||||||| |
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| T |
28533097 |
tggatacggtggagagagaactcaagttgcgacggttgttgt |
28533138 |
T |
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