View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_40 (Length: 460)
Name: NF1358_low_40
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_40 |
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| [»] scaffold0716 (1 HSPs) |
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Alignment Details
Target: scaffold0716 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: scaffold0716
Description:
Target: scaffold0716; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 30 - 448
Target Start/End: Original strand, 6218 - 6640
Alignment:
| Q |
30 |
gtcttatagttcagatcaacgttgaaattgtgatgcaggtgaagaggttgaagtggaagttttgaggaaatcatattatacttgttgatggactgtaagt |
129 |
Q |
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|||||||||||| |||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6218 |
gtcttatagttcggatcgacattgaaattgtcatgcaggtgaagaggttgaagtggaagttttgaggaaatcatattatacttgttgattgactgtaagt |
6317 |
T |
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| Q |
130 |
taaggtttattgggttttttataatcgactatttggtacatcttttggaaattctgttttcgtgtttagaacatgcatgtctcgagataaaatttgggat |
229 |
Q |
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| T |
6318 |
tgaggtttattgggttttttataatcgactatttggtacatcttttggaaattctgttttcgtgtttagaacatgcatgtctcgagataaaatttgggat |
6417 |
T |
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| Q |
230 |
gctcaa----taactgatgtatatgttttgtagtgttgtttctctcagaggttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttt |
325 |
Q |
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| T |
6418 |
gctcaacctgtttctgatgtaaatgttttgtagtggtgtttctctcagaggttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttt |
6517 |
T |
|
| Q |
326 |
tgtacgcttggaagaataaatagagtactaacttaattgttaatgagttgtgaagttgtgattgatttatcaaggatgtaattgaattacacttcattaa |
425 |
Q |
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||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
6518 |
tgtacgcttggaagaatgaattgagtactaacttaattgttaatgagttgtgaagttgtgattgatttatcaaggatgtaattgaattacactttattaa |
6617 |
T |
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| Q |
426 |
agacaagaacttttgtttatatt |
448 |
Q |
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| T |
6618 |
agacaagaacttttgtttgtatt |
6640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 62 - 351
Target Start/End: Complemental strand, 36162073 - 36161780
Alignment:
| Q |
62 |
atgcaggtgaagaggttgaagtggaagttttgaggaaatcatattatacttgttgatggactgtaagttaaggtttattgggttttttataatcgactat |
161 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| || ||||| |||||||||||| | |||||||| | || | |
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| T |
36162073 |
atgcaggtgaagaggttgaagtggaagtttagaggaaatcataccatacttgtggatggtcttgaagttgaggtttattgggatgtttataattggcttt |
36161974 |
T |
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| Q |
162 |
ttggtacatcttttggaaattctgttttcgtgtttagaacatgcatgtctcgagataaaatttgggatgctcaa----taactgatgtatatgttttgta |
257 |
Q |
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| T |
36161973 |
ttggtacatcttttggaaatgctgttttcatgtttagaacatgtttctctcaagataaaatttgggatgctcaacctgtttccgatgcaaatgttttgca |
36161874 |
T |
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| Q |
258 |
gtgttgtttctctcagaggttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaataaatagagt |
351 |
Q |
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| T |
36161873 |
gtggtctttctctcagaggttttctgagaccaaattgcagcaacaaggtgttggtttctcacatattttgtatgcttggaagaatgaatagagt |
36161780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 54 - 351
Target Start/End: Original strand, 29172109 - 29172411
Alignment:
| Q |
54 |
aaattgtgatgcaggtgaagaggttgaagtggaagttttgaggaaatcatattatacttgttgatggactgtaagttaaggtttattgggttttttataa |
153 |
Q |
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||||||||||||||||||||||||| |||| |||||| |||||||| || ||||||| || ||||||| ||||| |||||| ||||| | ||||||| |
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| T |
29172109 |
aaattgtgatgcaggtgaagaggttaaagttaaagtttagaggaaataatgctatacttttttatggacttgaagttgaggtttgttgggatgtttataa |
29172208 |
T |
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| Q |
154 |
tcgactatttggtacatcttttggaaattctgttttcgtgtttagaacatgcatgtctcgagataaaatttgggatgctcaa----taactgatgtatat |
249 |
Q |
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| T |
29172209 |
ttgactatgtggtacatctttagaaaatgttgttttcatgtttacaacatgtttctctcaagataaaacttgggatgctcaacccgtttctgatgcaaat |
29172308 |
T |
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| Q |
250 |
gttttgtagtgttgtttctctcagagg-ttttttgagactaaattgcagcaacaaggtgtcggtttctcacatgttttgtacgcttggaagaataaatag |
348 |
Q |
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| T |
29172309 |
gttttgcgatggtatttctttaagaggttttttttagaccaaattgtagcaacaaggtgttggtttcttacatgttttgtatgtttggaagaatgaatag |
29172408 |
T |
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| Q |
349 |
agt |
351 |
Q |
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||| |
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| T |
29172409 |
agt |
29172411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 29172431 - 29172509
Alignment:
| Q |
348 |
gagtactaacttaattgttaatgagttgtgaagttgtgattgatttatcaaggatgtaattgaattacacttcattaaa |
426 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||| |||||| |
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| T |
29172431 |
gagtactaacataattgttaatgagttatgaagttgtgattgatttatcaaggttgcgattgaattacactttattaaa |
29172509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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