View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_47 (Length: 429)
Name: NF1358_low_47
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_47 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 30 - 429
Target Start/End: Original strand, 14741246 - 14741648
Alignment:
| Q |
30 |
attttttcgtttctttggcctcaatgttgtcttcatgagtagcaacg---gttccttcttgaacttctagtgaatttttaacacacatatacaatctcca |
126 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
14741246 |
atttttttgtgtctttggcctcaatgttgtcttcatgagtagcaacgcttgttccttcttgaacttctagtgaatttttaacaaacatatacaatctcca |
14741345 |
T |
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| Q |
127 |
tactgtgtagtcgctctgaaaattacgcttaaaaaattagcgagtatcaaatcaagacttgctaaaataaacaaaatcgaaactttatagataacaaaat |
226 |
Q |
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| T |
14741346 |
tactgtgtagtcgctctgaaaattacgcttaaataattagtgagtatctaatcaagacttgctaaaataaacaaaatcgaaactttatagataacaaaat |
14741445 |
T |
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| Q |
227 |
tagtaaatgaaagcaaacaacattactagcaataggtaacatgacaaacctcagcttcaaggttaagggtcaccatatcaatactatgttggaaatttgg |
326 |
Q |
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| T |
14741446 |
tagtaaatgaaagcaaacaacattactagcaataggtaacatgacaaacctcagcttcaaggttaagggtcaccatatcaatactatgttggaaatttgg |
14741545 |
T |
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| Q |
327 |
attattctctttaacaatctctaatgccttgaggaggttatcaggagacaacttggggatggcattcgcaagtctggacttctcggaaagtgacaacttc |
426 |
Q |
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| T |
14741546 |
attattctctttaacaatctctaatgccttaaggaggttatcaggagacaacttggggatggcattcgcaagtctggacttctccgaaagtgacaacttc |
14741645 |
T |
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| Q |
427 |
cta |
429 |
Q |
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||| |
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| T |
14741646 |
cta |
14741648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 144
Target Start/End: Complemental strand, 14999450 - 14999335
Alignment:
| Q |
32 |
tttttcgtttctttggcctcaatgttgtcttcatgagtagcaacg---gttccttcttgaacttctagtgaatttttaacacacatatacaatctccata |
128 |
Q |
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| T |
14999450 |
tttttcgtttcctcggcctcaatgttgtcttcatgatcaatagcgcttgttccttcttgaacttctagcgtgtctttgacaaacatatacaatctcaaca |
14999351 |
T |
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| Q |
129 |
ctgtgtagtcgctctg |
144 |
Q |
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| T |
14999350 |
ttgtgtagtcgctctg |
14999335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 13636932 - 13636868
Alignment:
| Q |
48 |
cctcaatgttgtcttcatgagtagcaacggtt---ccttcttgaacttctagtgaatttttaaca |
109 |
Q |
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| T |
13636932 |
cctcagtgttgtcttcatgagtaacaacgcttattccttcttgaacttctagtgagtttttaaca |
13636868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 267 - 399
Target Start/End: Complemental strand, 29468049 - 29467917
Alignment:
| Q |
267 |
atgacaaacctcagcttcaaggttaagggtcaccatatcaatactatgttggaaatttggattattctctttaacaatctctaatgccttgaggaggtta |
366 |
Q |
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| T |
29468049 |
atgacaaacctgagaatcaaggtcaagggtcaccatatcaatacgatctttgaaatttggattgctctctttaactatctccaatgccttgacgatgtta |
29467950 |
T |
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| Q |
367 |
tcaggagacaacttggggatggcattcgcaagt |
399 |
Q |
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| T |
29467949 |
tcaggagacaatttggtgaaggcattcgcaagt |
29467917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 29468293 - 29468194
Alignment:
| Q |
48 |
cctcaatgttgtcttcatgagtagcaacg---gttccttcttgaacttctagtgaatttttaacacacatatacaatctccatactgtgtagtcgctctg |
144 |
Q |
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|||| ||||||||||||||| || |||| |||||||||||||||||||||| ||||||||| |||||| |||||| | | ||||||||||||||| |
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| T |
29468293 |
cctcgatgttgtcttcatgattaataacgcttgttccttcttgaacttctagtgtgtttttaacaaacatatgcaatctaaacaatgtgtagtcgctctg |
29468194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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