View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_49 (Length: 427)
Name: NF1358_low_49
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 97 - 427
Target Start/End: Original strand, 53172083 - 53172411
Alignment:
| Q |
97 |
aacctacacatttaataaattaaattgtcttctagtgtattttaaattatatacacattttgttnnnnnnnnnnnnactgccatatatattaacatgtgt |
196 |
Q |
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| T |
53172083 |
aacctacacatttaataaattaacttgtcttctagtgtattttaaattatacacacattttgtttgtgtgtgtgtgactgccatat--attaacatgtgt |
53172180 |
T |
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| Q |
197 |
cctattataataaaagtcaagattaggtaagacacaacatcaactgattagtcaatttgtatgagagaaaaaatgccgccactgaattgcattaagaaaa |
296 |
Q |
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| T |
53172181 |
cctattataataaaagtcaagattaggtaagacacaacatcaactgattagtcaatttgtatgagagaaaaaatgccgccactgaattgcattaagaaaa |
53172280 |
T |
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| Q |
297 |
ttcgaacaagtcttaattcatgcataagaagttataagcaaaaccatcatattttaataaaagataacatacgaaaaatatattttgattgtttgaagca |
396 |
Q |
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| T |
53172281 |
ttcgaacaagtctaaattcatgcataagaagttataagcaaaaccatcatattttaataaaagataacatacgaaaaatatattttgattgtttgaagca |
53172380 |
T |
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| Q |
397 |
ttgaaattgatgttattgtgtatagtttatt |
427 |
Q |
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| T |
53172381 |
ttgaaattgatgttattgtgtatagtttatt |
53172411 |
T |
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