View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_51 (Length: 423)
Name: NF1358_low_51
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_51 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 32 - 413
Target Start/End: Original strand, 9399529 - 9399915
Alignment:
| Q |
32 |
aggcacgtgctcatagaagaaatattaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatc |
131 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9399529 |
aggcacgtgctcataaaagaaatatcaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttttactgtggatc |
9399628 |
T |
|
| Q |
132 |
atataaaattgtgtgttcaatata-----cttcaatatattgttcttnnnnnnnnnncttctagattttttagtaagaaaaaatccaaaacaaacgtttg |
226 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9399629 |
atataaaattgtgtgttcaatataatatacttcaatatattgttcttaaaaaaata-cttctagattttttagtaagaaaaaatccaaaacaaacatttg |
9399727 |
T |
|
| Q |
227 |
agcattgat-tacgaattgtacataaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctga |
325 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9399728 |
agcattgatatacgacttgtacataaaagaaagaagtagagataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctga |
9399827 |
T |
|
| Q |
326 |
attttgatcctcagcacaatcaagcaatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttccttcctttg |
413 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
9399828 |
attttgatcctcggcacaatcaagcaatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9399915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 250 - 413
Target Start/End: Original strand, 9382283 - 9382446
Alignment:
| Q |
250 |
aaaagaaagaagtagcgataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
349 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9382283 |
aaaagaaggaagtagggataaatttaattaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaag |
9382382 |
T |
|
| Q |
350 |
caatatatcaagaaagtctctgaattcagcaccctgctcacccttattttccttccttcctttg |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
9382383 |
caatatatcaagaaagtctctgaattcagcaccttgctcacccttattttctttccttcctttg |
9382446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 9382041 - 9382129
Alignment:
| Q |
32 |
aggcacgtgctcatagaagaaatattaactcatcaatgaatatttttcaaagggaatatttgttattcaaatccgtaccaattaagttt |
120 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9382041 |
aggcacgtgctcatagatgaaatatcaactcatcaatgaatatgtatcgaagggaatatttgttattcaaatccgtaccaattaagttt |
9382129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 370
Target Start/End: Complemental strand, 23243915 - 23243822
Alignment:
| Q |
277 |
ttaccataatcaaggccttgatgtgaaccctttgaacttttatttctgaattttgatcctcagcacaatcaagcaatatatcaagaaagtctct |
370 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| ||| || || || ||| |||||| || ||||||| | ||||||||||||||||| |
|
|
| T |
23243915 |
ttaccataatcaaggccttaacgtgaaccctttgaattttcatctcagagctttcatcctcgacataatcaagtaggatatcaagaaagtctct |
23243822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University