View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_52 (Length: 422)
Name: NF1358_low_52
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 29 - 410
Target Start/End: Original strand, 13614664 - 13615045
Alignment:
| Q |
29 |
aagtactacccaataccaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggttta |
128 |
Q |
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| T |
13614664 |
aagtactacccaataccaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggttta |
13614763 |
T |
|
| Q |
129 |
ttgttgccttcattgtctcatttttcatatttgcaatttcttgacataagtttctgcaatcttcttcaaatccctgatgctattgggtggttacactgct |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13614764 |
ttgttgccttcattgtctcatttttcatatttgcaatttcttgacataagtttctgcaatcttcttcaaatccctgatgctattgggtggttacactgct |
13614863 |
T |
|
| Q |
229 |
tagaattcctatggttgggtgggaacagatttgttactctaccgcctagtatagaagaactttccaaacttagaaatttgaacttgaatcactgtaagca |
328 |
Q |
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| T |
13614864 |
tagaaatcctaaggttgggtgggaacagatttgttactctaccgcctagtatagaagaactttccaaacttagaaaattgaacttgaatcactgtaagca |
13614963 |
T |
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| Q |
329 |
actgaaatatttaccggaactcccatcgataactgctttgccaataatagaagatatccttgactattctggattatatatt |
410 |
Q |
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| T |
13614964 |
actgaaatatttaccggaactcccatcgataactgctttgccaataatagaagatatccttgactattctggattatatatt |
13615045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 9e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 31 - 340
Target Start/End: Original strand, 31246896 - 31247205
Alignment:
| Q |
31 |
gtactacccaataccaatcaacttcctgcatccacaaagttctaaagcgtcactttggattttcaatttttcgaaagcgagaagattcaattggtttatt |
130 |
Q |
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| T |
31246896 |
gtactactcaataccaaccaacatccttcatctacaaagttctaaagccgcactttccattttctttttttcgaaaacgcgaagattcggttggtttatt |
31246995 |
T |
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| Q |
131 |
gttgccttcattgtctcatttttcatatttgcaatttcttgacataagtttctgcaatcttcttcaaatccctgatgctattgggtggttacactgctta |
230 |
Q |
| |
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||||||||| |||||| | | |||| | |||||| ||||||| ||||||||||||||||| ||||||||||| |||| ||||| || |||| |||||| |
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| T |
31246996 |
gttgccttcgttgtcttgtctgtcatgtctgcaatatcttgacctaagtttctgcaatctttttcaaatccctaatgcaattggaaggctacattgctta |
31247095 |
T |
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| Q |
231 |
gaattcctatggttgggtgggaacagatttgttactctaccgcctagtatagaagaactttccaaacttagaaatttgaacttgaatcactgtaagcaac |
330 |
Q |
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| T |
31247096 |
gaaattctaaatgtgggaggaaacaattttgttactctaccttctagcatcaaggaactttccaaacttagacagttgaacttggagcattgtaaacagc |
31247195 |
T |
|
| Q |
331 |
tgaaatattt |
340 |
Q |
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|||||||||| |
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| T |
31247196 |
tgaaatattt |
31247205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 167 - 334
Target Start/End: Original strand, 31212621 - 31212788
Alignment:
| Q |
167 |
tcttgacataagtttctgcaatcttcttcaaatccctgatgctattgggtggttacactgcttagaattcctatggttgggtgggaacagatttgttact |
266 |
Q |
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||||||| ||||||||||||||||||||||| ||||| |||| ||||||| ||| || ||||||||| | ||| ||| || ||||||| ||||| || |
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| T |
31212621 |
tcttgacctaagtttctgcaatcttcttcaagtccctaatgcaattgggttgttgcattgcttagaaatgctaaagttaggggggaacaattttgtgaca |
31212720 |
T |
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| Q |
267 |
ctaccgcctagtatagaagaactttccaaacttagaaatttgaacttgaatcactgtaagcaactgaa |
334 |
Q |
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| T |
31212721 |
ctaccttctagcatgaaataactttccaaacttagagaattgaacttggagcactgtaagcagctgaa |
31212788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 31304296 - 31304348
Alignment:
| Q |
329 |
actgaaatatttaccggaactcccatcgataactgctttgccaataatagaag |
381 |
Q |
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|||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |
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| T |
31304296 |
actgtaatatttaccagaactcccatcgataactgcttttccaataatagaag |
31304348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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