View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_54 (Length: 420)
Name: NF1358_low_54
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 46 - 379
Target Start/End: Original strand, 29908337 - 29908665
Alignment:
| Q |
46 |
ggatttgaaaaagagggggaaagataaattctcctttgatgtgaatggacatgtaattgaattagcttaaattaattggaggaattgaaggaattcaatc |
145 |
Q |
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| T |
29908337 |
ggatttgaaaaagagggggaaagataaattctcctttgatgtgaatggacatgtaattgaattagcttaaattaattggaggaattgaaggaattcaatc |
29908436 |
T |
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| Q |
146 |
aaaccccacgtgcatcttcaaatcatcctctattccttgataatgacagc-nnnnnnncctgtagaagaaaaaccaccatagagaagtaaaccgctgtcc |
244 |
Q |
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| T |
29908437 |
aaaccccacgtgcatcttcaaatcatcctttattccttgataacgacagcttttttttcctgtagaagaaaa------atagagaagtaaacggttgtcc |
29908530 |
T |
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| Q |
245 |
aatcaatcccnnnnnnnttcaaaaaggctcattaaaccgcgaaaatttcaccaaatatgttacaaaagtcaaaccaccagcagatgaatatcaacggtct |
344 |
Q |
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| T |
29908531 |
aatcaatcccaaaaaaattcaaaaaggctcattaaaccgcgaaaatttcaccaaatatgttacaaaagtcaaaccaccagcagatgaatatcaatggtct |
29908630 |
T |
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| Q |
345 |
gctgaacaatctcattaacactggtaagattaagg |
379 |
Q |
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| T |
29908631 |
gctgaacaatctcattaacattggtaagattaagg |
29908665 |
T |
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