View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_55 (Length: 419)
Name: NF1358_low_55
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 8 - 367
Target Start/End: Complemental strand, 33205033 - 33204670
Alignment:
| Q |
8 |
caccacagagacaaagttatagaaccatttattttcccaaacaattaaacatcaaattaccaacggggtcaattagattacagatattgagctatttaat |
107 |
Q |
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| T |
33205033 |
caccacacagacaaagttatagaaccatttattttcccaaacaattaaacatcaaaataccaacggggtcaattagattacagatattgagctatttaat |
33204934 |
T |
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| Q |
108 |
ctctcacttttacagcaaaatacaccttacatagctcctttttcttctctaataaattagatagacacaccctccccctaatttatcacctatattacac |
207 |
Q |
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| T |
33204933 |
ctctcacttttacagcaaaatacaccttacatagctcctttttcttctctaataaattagatagacacaccctccccctaatttatcacctatattacac |
33204834 |
T |
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| Q |
208 |
aaaaacaaaatgatctggaaaaaatacaagcctttgtatttctcatttcccagc--nnnnnnnnnccttttagtatctttagtttaacataatt--nnnn |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33204833 |
aaaaacaaaatgatctggaaaaaatacaagcctttgtatttctcatttcccagctttttttttttccttttagtatctttagtttaacataattaaaaaa |
33204734 |
T |
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| Q |
304 |
nnnnnnnctaaattaaagttaaattaaaattgcagtcttgctaatgtgagcttcgcagcttata |
367 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||| || |||||| |
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| T |
33204733 |
aaaaaaactaaattaaagttaaattaaaattacattcttgctaatgtgagcttcacatcttata |
33204670 |
T |
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