View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_57 (Length: 412)
Name: NF1358_low_57
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 120 - 402
Target Start/End: Original strand, 52718090 - 52718364
Alignment:
| Q |
120 |
gcaggtctgttcatggctttacagcctaagctgattgcatgtggaaaacgagttgcaacattttctatggctgtaaggttcttgaccggtccagctgtga |
219 |
Q |
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| T |
52718090 |
gcaggtctgttcatggctttacagcctaagctgattgcatgtggaaaacgagttgcaacattttctatggctgtaaggttcttgaccggtccagctgtga |
52718189 |
T |
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| Q |
220 |
ttgcggcaacctcaatagcaattggtatccgtggagttctgttacatgttgcaattgttcaggtatgtgaaattaaattcagtttatcaattaatcaaaa |
319 |
Q |
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| T |
52718190 |
ttgcggcaacctcaatagcaattggtatccgtggagttctgttacatgttgcaattgttcaggtatgtgaaattaaattcagttt--------atcaaaa |
52718281 |
T |
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| Q |
320 |
tgcttaataaattcagtttgttaccataattatgtttgattttaatttgcaggctgcacttccccaaggtattgttccctttg |
402 |
Q |
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| T |
52718282 |
tgcttaatatattcagtttgttaccataattttgtttgattttaatttgcaggctgcacttccccaaggtattgttccctttg |
52718364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 122 - 283
Target Start/End: Original strand, 52712438 - 52712599
Alignment:
| Q |
122 |
aggtctgttcatggctttacagcctaagctgattgcatgtggaaaacgagttgcaacattttctatggctgtaaggttcttgaccggtccagctgtgatt |
221 |
Q |
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| T |
52712438 |
aggtttgttcatgggattacaacctaagctgatttcacgtgggaaaaaaattgcaacatattctatggctgtaaggttcttggtcggtccagctgtgatt |
52712537 |
T |
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| Q |
222 |
gcggcaacctcaatagcaattggtatccgtggagttctgttacatgttgcaattgttcaggt |
283 |
Q |
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| T |
52712538 |
gcggcaacctcgttagcagttggtctccgtggagttctcttacatgttgcaattgttcaggt |
52712599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 52717997 - 52718050
Alignment:
| Q |
1 |
tggaatggccatgttcagtctaggtacttgtcaattccaaacattatattctcc |
54 |
Q |
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| T |
52717997 |
tggaatggccatgttcagtctaggtacttttcaattccaaacattatattctcc |
52718050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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