View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_58 (Length: 410)

Name: NF1358_low_58
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_58
NF1358_low_58
[»] chr6 (5 HSPs)
chr6 (49-187)||(7972243-7972384)
chr6 (48-187)||(21526905-21527047)
chr6 (49-110)||(2437290-2437351)
chr6 (49-110)||(23411026-23411087)
chr6 (120-181)||(6026605-6026668)
[»] chr5 (14 HSPs)
chr5 (53-187)||(17558317-17558453)
chr5 (48-196)||(20202178-20202329)
chr5 (49-167)||(36059559-36059677)
chr5 (61-167)||(32717611-32717718)
chr5 (49-167)||(16366061-16366180)
chr5 (49-110)||(6428579-6428640)
chr5 (49-110)||(17201943-17202004)
chr5 (11-58)||(17558189-17558236)
chr5 (49-94)||(1584004-1584049)
chr5 (49-110)||(1584194-1584255)
chr5 (49-107)||(14655320-14655380)
chr5 (120-189)||(28620613-28620682)
chr5 (49-110)||(39940186-39940246)
chr5 (74-110)||(44595-44631)
[»] chr2 (10 HSPs)
chr2 (49-187)||(34424362-34424503)
chr2 (49-184)||(4958966-4959104)
chr2 (53-110)||(27746984-27747041)
chr2 (49-167)||(12412958-12413078)
chr2 (49-167)||(12425018-12425138)
chr2 (49-110)||(7485760-7485821)
chr2 (11-58)||(34424582-34424629)
chr2 (120-186)||(33660692-33660760)
chr2 (13-57)||(4959182-4959226)
chr2 (13-57)||(25965457-25965501)
[»] chr1 (8 HSPs)
chr1 (49-187)||(11237580-11237720)
chr1 (49-187)||(31622763-31622904)
chr1 (70-188)||(1674237-1674356)
chr1 (49-110)||(39387028-39387089)
chr1 (49-167)||(41117482-41117601)
chr1 (13-57)||(2656086-2656130)
chr1 (70-110)||(2656229-2656269)
chr1 (123-167)||(4395536-4395580)
[»] chr4 (10 HSPs)
chr4 (49-189)||(38433825-38433967)
chr4 (51-167)||(55344079-55344197)
chr4 (49-110)||(9808113-9808173)
chr4 (48-110)||(45666799-45666861)
chr4 (48-187)||(37371006-37371151)
chr4 (49-167)||(24537912-24538029)
chr4 (48-96)||(24073413-24073461)
chr4 (70-110)||(45634984-45635024)
chr4 (13-57)||(45635123-45635167)
chr4 (69-110)||(47944026-47944067)
[»] chr3 (12 HSPs)
chr3 (49-187)||(7259285-7259427)
chr3 (53-167)||(21959330-21959445)
chr3 (49-110)||(13779163-13779224)
chr3 (49-110)||(27264292-27264353)
chr3 (70-154)||(25841485-25841570)
chr3 (51-187)||(16236976-16237115)
chr3 (48-110)||(27817932-27817994)
chr3 (47-110)||(42735084-42735146)
chr3 (13-51)||(25841668-25841706)
chr3 (48-110)||(45667928-45667990)
chr3 (122-167)||(297018-297063)
chr3 (13-58)||(7259503-7259548)
[»] chr8 (10 HSPs)
chr8 (51-165)||(3443328-3443444)
chr8 (61-189)||(9455590-9455720)
chr8 (48-110)||(7694959-7695021)
chr8 (123-166)||(34039449-34039492)
chr8 (49-110)||(34146765-34146826)
chr8 (76-110)||(2742601-2742635)
chr8 (120-165)||(7577837-7577882)
chr8 (13-58)||(7578000-7578045)
chr8 (13-58)||(9455456-9455501)
chr8 (70-110)||(11087679-11087719)
[»] chr7 (20 HSPs)
chr7 (48-187)||(14771015-14771157)
chr7 (48-187)||(15221467-15221609)
chr7 (49-187)||(39434444-39434586)
chr7 (49-187)||(4962536-4962676)
chr7 (49-167)||(15643649-15643767)
chr7 (49-110)||(3835316-3835377)
chr7 (53-187)||(46671618-46671757)
chr7 (70-187)||(25290987-25291108)
chr7 (124-187)||(24393682-24393746)
chr7 (48-167)||(39429934-39430057)
chr7 (49-110)||(39618185-39618246)
chr7 (49-109)||(4678875-4678934)
chr7 (11-58)||(14771233-14771280)
chr7 (11-58)||(15221685-15221732)
chr7 (122-167)||(33258987-33259032)
chr7 (46-109)||(10534489-10534552)
chr7 (49-110)||(4567878-4567938)
chr7 (49-110)||(16197346-16197406)
chr7 (118-167)||(27061982-27062031)
chr7 (123-167)||(4678952-4678996)
[»] scaffold0097 (1 HSPs)
scaffold0097 (48-157)||(48503-48612)
[»] scaffold1130 (2 HSPs)
scaffold1130 (49-187)||(725-866)
scaffold1130 (11-58)||(601-648)
[»] scaffold0005 (3 HSPs)
scaffold0005 (48-110)||(257279-257341)
scaffold0005 (48-110)||(271926-271989)
scaffold0005 (120-178)||(271850-271910)
[»] scaffold0006 (2 HSPs)
scaffold0006 (11-58)||(46119-46166)
scaffold0006 (11-58)||(46401-46448)
[»] scaffold1986 (1 HSPs)
scaffold1986 (49-110)||(638-699)
[»] scaffold0841 (1 HSPs)
scaffold0841 (49-110)||(4213-4274)


Alignment Details
Target: chr6 (Bit Score: 74; Significance: 8e-34; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 7972384 - 7972243
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||||||||        | |||||||||||||||||||| |||||||    
T  7972384 aaagataaaatgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataatagaaaaaaagtgtgcaaaaatacacttcgttatttttgtg 7972285  T
Q  148 ttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    |||||||||||||||| |||  ||||||||||||||||||||    
T  7972284 ttaaaattctaaaacgtcacttaaaaagaaacggagggagta 7972243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 21527047 - 21526905
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgt 146  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||| |       | ||||||||||||||||| || |||||     
T  21527047 aaaagataaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtgtaataggaaaaaagtgtgcaaaaatacacttcgctatttttga 21526948  T
Q  147 gttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
     ||||||||||||||||||||  |||||| |||||||||||||    
T  21526947 tttaaaattctaaaacgacacttaaaaaggaacggagggagta 21526905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 2437351 - 2437290
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||||||| | ||||||||    
T  2437351 aaagataaagtgtgtgcaaaaaaataggaatttattggtggattaaaatgatggtataatag 2437290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 23411026 - 23411087
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||| ||||| | |||||| |||||||||  |||| |||||||||||||||| ||||||||    
T  23411026 aaagagaaagtgtatgcaaaaaaataggaatatattggtggattaaaatgagggtataatag 23411087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 6026605 - 6026668
Alignment:
Q  120 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacggag 181  Q
    |||||| |||||||| | || ||||||||||| |||||||||||||||  |||||| |||||||    
T  6026605 tgcaaacatacactttgctatttttgtgttaatattctaaaacgacacttaaaaaggaacggag 6026668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 17558317 - 17558453
Alignment:
Q  53 ataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtgttaa 151  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |       | || |||||||||||||| || |||||||||||    
T  17558317 ataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgaggatataataggaaaaatgtgtgtaaaaatacacttcgctatttttgtgttaa 17558415  T
Q  152 aattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    ||||||||||||||||  ||||| ||||||||||||||    
T  17558416 aattctaaaacgacacttaaaaaaaaacggagggagta 17558453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 48 - 196
Target Start/End: Original strand, 20202178 - 20202329
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgt 146  Q
    |||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| ||||||||        | ||||||||||||||| | || ||||||    
T  20202178 aaaagataaagtgtgtgcaaaaaaatatgaaattattagtgaattaaaatgagggtataataggaaaaaaatgtgcaaaaatacacttagctatttttgt 20202277  T
Q  147 gttaaaattctaaaacgacac--aaaaagaaacggagggagtaatcattaaa 196  Q
    ||||||||| |||||||||||  |||||| ||||||||||||| ||||||||    
T  20202278 gttaaaattttaaaacgacacttaaaaaggaacggagggagtattcattaaa 20202329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 36059677 - 36059559
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |       | || |||||||||||||  || |||||||    
T  36059677 aaagataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgagggtataataggaaaaaaatgtgaaaaaatacacttcactatttttgtg 36059579  T
Q  148 ttaaaattctaaaacgacac 167  Q
    ||||||||||||| ||||||    
T  36059578 ttaaaattctaaatcgacac 36059559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 167
Target Start/End: Complemental strand, 32717718 - 32717611
Alignment:
Q  61 tgtgcaaagaaat-aggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgtgttaaaattcta 158  Q
    |||||||| |||| ||||||||||||||||||||| |||||| ||||||||        | ||||||| ||||||||| || ||||||||||||||||||    
T  32717718 tgtgcaaaaaaattaggaaattattagtggattaacatgagggtataataggaaaaaagtgtgcaaaa-tacacttcgctatttttgtgttaaaattcta 32717620  T
Q  159 aaacgacac 167  Q
    |||||||||    
T  32717619 aaacgacac 32717611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 16366061 - 16366180
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| || ||||| | ||| |||||||||||  ||||||||||||| ||||||||        | ||||||||||||||||  || |||||||    
T  16366061 aaagataaagtgtgcgcaaaaatatatgaaattattagaagattaaaatgagggtataataggaaaaaagtttgcaaaaatacacttcactatttttgtg 16366160  T
Q  148 ttaaaattctaaaacgacac 167  Q
    |||||||||| |||||||||    
T  16366161 ttaaaattcttaaacgacac 16366180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 6428579 - 6428640
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||||||| | ||||||||    
T  6428579 aaagataaagtgtgtgcaaaaaaataggaacttattggtggattaaaatgaaggtataatag 6428640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 17202004 - 17201943
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||| ||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  17202004 aaagataaagtttgtgtaaaaaaataggaatttattggtggattaaaatgagggtataatag 17201943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 17558189 - 17558236
Alignment:
Q  11 ataatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  17558189 ataatatttagaaaattgaaaattgtttgttttgaaagaaagataaag 17558236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 1584004 - 1584049
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaa 94  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||    
T  1584004 aaagataaagtgtgtgcaaaaaaataggaatttattggtggattaa 1584049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 1584194 - 1584255
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||||| | |||||| || ||||  |||||||||||||||| ||||||||    
T  1584194 aaagataaagtgtgtgcagaaaaatagaaatttatcggtggattaaaatgagggtataatag 1584255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 14655320 - 14655380
Alignment:
Q  49 aaagataaagtatgtgcaaagaaata--ggaaattattagtggattaaaatgaggatataa 107  Q
    ||||||||||| |||||||| ||| |  ||||||||||| ||||||||||||||| |||||    
T  14655320 aaagataaagtgtgtgcaaaaaaaaaaaggaaattattaatggattaaaatgagggtataa 14655380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 189
Target Start/End: Original strand, 28620613 - 28620682
Alignment:
Q  120 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacggagggagtaat 189  Q
    ||||||||||||| ||||||  ||||||||||  |||||||| |||||  |||||| |||||||||||||||    
T  28620613 tgcaaaaatacacatcgtta--tttgtgttaattttctaaaaagacacttaaaaaggaacggagggagtaat 28620682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 39940246 - 39940186
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    |||||| |||| |||| ||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  39940246 aaagatcaagtgtgtgaaaa-aaataggaatttattggtggattaaaatgagggtataatag 39940186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 44631 - 44595
Alignment:
Q  74 aggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  44631 aggaatttattggtggattaaaatgaggatataatag 44595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 34424503 - 34424362
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||        | || |||||||||||||| || |||||||    
T  34424503 aaagataaagtgtgtgcaaagaaataggaaattatcagtggattaaaataagggtataatagaaaaaaagtgtgtaaaaatacacttcgctatttttgtg 34424404  T
Q  148 ttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    |||||||| |||||||||||  |||||| |||||| ||||||    
T  34424403 ttaaaattttaaaacgacacttaaaaaggaacggatggagta 34424362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 4959104 - 4958966
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| ||||||| |       | |||||| |||||||| | || ||| |||    
T  4959104 aaagataaagtgtgtgcaaaaaaaaaggaaattattagtggattaaaatgagggtataataggaaaaaagtgtgcaaagatacactttgctattttagtg 4959005  T
Q  148 ttaaaattctaaaacgacac--aaaaagaaacggaggga 184  Q
    |||||| |||||||| ||||  |||||| ||||||||||    
T  4959004 ttaaaactctaaaacaacacttaaaaaggaacggaggga 4958966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 27746984 - 27747041
Alignment:
Q  53 ataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  27746984 ataaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataatag 27747041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 12412958 - 12413078
Alignment:
Q  49 aaagataaagtatgtgcaaagaaat-aggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgt 146  Q
    ||||||||||| |||||||| |||| || ||| ||||| ||||||||||||||| ||||||||        | ||||||||||||||||| |  ||||||    
T  12412958 aaagataaagtgtgtgcaaaaaaattagaaaactattaatggattaaaatgagggtataataggaaaaaagtgtgcaaaaatacacttcgctttttttgt 12413057  T
Q  147 gttaaaattctaaaacgacac 167  Q
    |||||||||||||||||||||    
T  12413058 gttaaaattctaaaacgacac 12413078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 12425018 - 12425138
Alignment:
Q  49 aaagataaagtatgtgcaaagaaat-aggaaattattagtggattaaaatgaggatataatagnnnnnnn-tatgcaaaaatacacttcgttagttttgt 146  Q
    ||||||||||| |||||||| |||| || ||| ||||| ||||||||||||||| ||||||||        | ||||||||||||||||| |  ||||||    
T  12425018 aaagataaagtgtgtgcaaaaaaattagaaaactattaatggattaaaatgagggtataataggaaaaaagtgtgcaaaaatacacttcgctttttttgt 12425117  T
Q  147 gttaaaattctaaaacgacac 167  Q
    |||||||||||||||||||||    
T  12425118 gttaaaattctaaaacgacac 12425138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 7485821 - 7485760
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| | |||||| |||||||||||||||||| ||||||||||||  ||||||||    
T  7485821 aaagataaagtgtatgcaaaaaaataggaaattattagtagattaaaatgagagtataatag 7485760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 34424629 - 34424582
Alignment:
Q  11 ataatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||||||||||||||||||| ||| | ||| ||||||    
T  34424629 ataatatttagaaaattaaaaattgtttgttatgaaagaaaaataaag 34424582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 33660692 - 33660760
Alignment:
Q  120 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacggagggagt 186  Q
    ||||||||||||||| | || |||||| |||| |||||||||||||||  |||||| |||||| |||||    
T  33660692 tgcaaaaatacactttgctatttttgtattaatattctaaaacgacacttaaaaaggaacggatggagt 33660760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 4959226 - 4959182
Alignment:
Q  13 aatatttagaaaattaaaaattgtttgttttgataaaaagataaa 57  Q
    ||||||||||||||| ||||||||||||| ||| | |||||||||    
T  4959226 aatatttagaaaattgaaaattgtttgttatgagagaaagataaa 4959182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 25965501 - 25965457
Alignment:
Q  13 aatatttagaaaattaaaaattgtttgttttgataaaaagataaa 57  Q
    ||||||||||||||| ||||||||||||| ||| | |||||||||    
T  25965501 aatatttagaaaattgaaaattgtttgttatgagagaaagataaa 25965457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 11237720 - 11237580
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtgt 148  Q
    ||||||||| | |||||||| |||| | ||||||||||||||||||||||| | ||||||||        |||||||||||||||||  || ||||||||    
T  11237720 aaagataaaatgtgtgcaaaaaaattgaaaattattagtggattaaaatgatggtataataggaaaaaaaatgcaaaaatacacttcactatttttgtgt 11237621  T
Q  149 taaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    || ||||||||||||||||  |||||| |||||||||||||    
T  11237620 tataattctaaaacgacacttaaaaagtaacggagggagta 11237580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 31622904 - 31622763
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||  |||||| |       | |||||||||||||||||||| |||||||    
T  31622904 aaagataaagtgtgtgcaaaaaaataggaaattattagtggagtaaaatgagggaataataggagaaaaatgtgcaaaaatacacttcgttatttttgtg 31622805  T
Q  148 ttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
     |||||||||| || |||||  |||||| |||||| ||||||    
T  31622804 ctaaaattctagaatgacacttaaaaaggaacggatggagta 31622763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 188
Target Start/End: Complemental strand, 1674356 - 1674237
Alignment:
Q  70 aaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac-- 167  Q
    |||||||||||||||| || |||||||||||||||| ||||       | | ||||||||||||| |||| |||||||||||||||||||||||||||      
T  1674356 aaataggaaattattattgcattaaaatgaggatatgatagaaaaaa-tgtacaaaaatacactttgttatttttgtgttaaaattctaaaacgacactt 1674258  T
Q  168 aaaaagaaacggagggagtaa 188  Q
    |||||  ||||||||||||||    
T  1674257 aaaaaagaacggagggagtaa 1674237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 39387028 - 39387089
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||||||| || |||||| ||||| ||||||||||||||| |||||||||    
T  39387028 aaagataaagtgtgtgcaaaaaagtaggaatttattcgtggattaaaatgagaatataatag 39387089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 41117482 - 41117601
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| |||||||| |||||  || ||||| |||||||||||||||| ||||||||         |||||||||||||| ||| |||||| |||    
T  41117482 aaagataaagtgtgtgcaaaaaaataaaaatttattggtggattaaaatgagggtataatagaaaaaaaaaatgcaaaaatacacatcgctagtttggtg 41117581  T
Q  148 ttaaaattctaaaacgacac 167  Q
    ||||  |||||||| |||||    
T  41117582 ttaattttctaaaaagacac 41117601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 2656086 - 2656130
Alignment:
Q  13 aatatttagaaaattaaaaattgtttgttttgataaaaagataaa 57  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||    
T  2656086 aatatttagaaaatttaaaattgtttgttatgagaaaaagataaa 2656130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 2656229 - 2656269
Alignment:
Q  70 aaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  2656229 aaataggaaattagtagtggattaaaatgagggtataatag 2656269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 4395580 - 4395536
Alignment:
Q  123 aaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 167  Q
    |||||||||||||| || |||||||||||||||| ||||||||||    
T  4395580 aaaaatacacttcgctatttttgtgttaaaattccaaaacgacac 4395536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 189
Target Start/End: Complemental strand, 38433967 - 38433825
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |       | |||||||||| |||||| || |||||||    
T  38433967 aaagataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgagggtataataggaaaaaagtttgcaaaaatatacttcgctatttttgtg 38433869  T
Q  148 ttaaaattctaaaacgacac--aaaaagaaacggagggagtaat 189  Q
    |||||||| |||||||||||  |||||| |||| | ||||||||    
T  38433868 ttaaaattttaaaacgacacttaaaaaggaacgaatggagtaat 38433825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 55344079 - 55344197
Alignment:
Q  51 agataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata--gnnnnnnntatgcaaaaatacacttcgttagttttgtgt 148  Q
    ||||||||| |||||||| | |||||||||||||||||||||||||||||| |||||||          | |||||||||||| |||| || ||||||||    
T  55344079 agataaagtgtgtgcaaaaatataggaaattattagtggattaaaatgagggtataatatgaaaaaaaatgtgcaaaaatacatttcgctatttttgtgt 55344178  T
Q  149 taaaattctaaaacgacac 167  Q
    |||||||||||||||||||    
T  55344179 taaaattctaaaacgacac 55344197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 9808113 - 9808173
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  9808113 aaagataaagtgtgtgcaaa-aaataggaatttattagtggattaaaatgaggatataatag 9808173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 45666799 - 45666861
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    |||||||||||| |||||||| ||||||||| ||||| |||||||||||||||| ||||||||    
T  45666799 aaaagataaagtgtgtgcaaaaaaataggaatttattggtggattaaaatgagggtataatag 45666861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 37371151 - 37371006
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaatagg-aaattattagtggattaaaatgaggatataatagnnnnnnnta---tgcaaaaatacacttcgttagttt 143  Q
    |||||||||||| |||||||| ||| | | ||||||||||||||||||| ||||| ||||||||        |   | ||||||||||||||  || |||    
T  37371151 aaaagataaagtgtgtgcaaaaaaaaaagtaaattattagtggattaaattgagggtataatagaaaaaaaaagtgttcaaaaatacacttcactatttt 37371052  T
Q  144 tgtgttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    ||||||||||||||||||||||||  |||||| |||||| ||||||    
T  37371051 tgtgttaaaattctaaaacgacacttaaaaaggaacggatggagta 37371006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 167
Target Start/End: Complemental strand, 24538029 - 24537912
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn--tatgcaaaaatacacttcgttagttttgt 146  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||||| ||| | ||||||||         | ||||||||||||||||| || |||| |    
T  24538029 aaagataaagtgtgtgaaaa-aaataggaaattattagtggattaaa-tgaag-tataataggaaaaaaagtgtgcaaaaatacacttcgctatttttat 24537933  T
Q  147 gttaaaattctaaaacgacac 167  Q
    |||||||||||||||||||||    
T  24537932 gttaaaattctaaaacgacac 24537912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 24073461 - 24073413
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaa 96  Q
    |||||||||||| ||||||||||||||| || ||||| |||||||||||    
T  24073461 aaaagataaagtgtgtgcaaagaaatagaaatttattggtggattaaaa 24073413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 45635024 - 45634984
Alignment:
Q  70 aaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||||| |||||||||||||||||| ||||||||    
T  45635024 aaataggaaattagtagtggattaaaatgagggtataatag 45634984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 57
Target Start/End: Complemental strand, 45635167 - 45635123
Alignment:
Q  13 aatatttagaaaattaaaaattgtttgttttgataaaaagataaa 57  Q
    ||||||||||||||| ||||||||||||| ||| |||||||||||    
T  45635167 aatatttagaaaatttaaaattgtttgttatgagaaaaagataaa 45635123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 47944067 - 47944026
Alignment:
Q  69 gaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    |||||||||| ||||| |||||||||||||||| ||||||||    
T  47944067 gaaataggaatttattggtggattaaaatgagggtataatag 47944026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 7259427 - 7259285
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn--tatgcaaaaatacacttcgttagttttgt 146  Q
    |||||||||||  ||||||| |||||  ||||||||||||||||||||||||| ||||||||         | ||||||||||||||| | || ||||||    
T  7259427 aaagataaagtgggtgcaaaaaaataaaaaattattagtggattaaaatgagggtataataggaaaaaaagtgtgcaaaaatacactttgctatttttgt 7259328  T
Q  147 gttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    |||||||||||||||||||||  |||||| |||||||||||||    
T  7259327 gttaaaattctaaaacgacacttaaaaaggaacggagggagta 7259285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 21959445 - 21959330
Alignment:
Q  53 ataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtgttaa 151  Q
    ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |       | |||||||| ||||||||||| |||| ||||||    
T  21959445 ataaagtgtgtgcaaaaaaataggaaattattagtggattaaaatgagggtataataggaaaaaggtgtgcaaaaagacacttcgttatttttatgttaa 21959346  T
Q  152 aattctaaaacgacac 167  Q
    |||| |||||||||||    
T  21959345 aattttaaaacgacac 21959330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 13779163 - 13779224
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||  |||||||| |||||||||||||||||| ||||||||||||| ||||||||    
T  13779163 aaagataaagggtgtgcaaaaaaataggaaattattagtagattaaaatgagggtataatag 13779224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 27264292 - 27264353
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||| ||| |||||||| ||||||||| ||||| |||||||||||| ||||||||||||    
T  27264292 aaagatatagtgtgtgcaaataaataggaatttattggtggattaaaattaggatataatag 27264353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 25841570 - 25841485
Alignment:
Q  70 aaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgtgttaaaat 154  Q
    ||||||||||||||||||| |||||||||||| ||||||||        | ||||||||||||||| |||| ||||||||||||||    
T  25841570 aaataggaaattattagtgaattaaaatgagggtataatagaaaaaaaatgtgcaaaaatacactttgttatttttgtgttaaaat 25841485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 16237115 - 16236976
Alignment:
Q  51 agataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtgtt 149  Q
    ||||||||| |||||||  ||||||||| |||||  ||||||||||||||| ||||||| |       | || |||||||||| ||| || |||||||||    
T  16237115 agataaagtgtgtgcaagaaaataggaatttatttatggattaaaatgagggtataataggaagaaaatgtgaaaaaatacacatcgctatttttgtgtt 16237016  T
Q  150 aaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    ||  |||||||| |||||  |||||| |||||||||||||    
T  16237015 aattttctaaaaagacacttaaaaaggaacggagggagta 16236976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 27817932 - 27817994
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    |||||||||| | |||||||| ||||||||| ||||| |||||||||||| ||| ||||||||    
T  27817932 aaaagataaaatgtgtgcaaaaaaataggaatttattggtggattaaaataagggtataatag 27817994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 42735146 - 42735084
Alignment:
Q  47 aaaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||||| | |||||| ||||||||| |||||  ||||||||||| ||||||||||||    
T  42735146 aaaaagataaagtgtatgcaaaaaaataggaatttattgatggattaaaat-aggatataatag 42735084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 25841706 - 25841668
Alignment:
Q  13 aatatttagaaaattaaaaattgtttgttttgataaaaa 51  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  25841706 aatatttagaaaattaaaaattgtttgttatgaaaaaaa 25841668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 45667928 - 45667990
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    |||||||||||| |||||||  ||||| ||| ||||| |||||||||||||| | ||||||||    
T  45667928 aaaagataaagtgtgtgcaagaaaataagaatttattggtggattaaaatgaaggtataatag 45667990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 297018 - 297063
Alignment:
Q  122 caaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 167  Q
    ||||||||||||||| || ||| ||||||| |||||||||||||||    
T  297018 caaaaatacacttcgctattttggtgttaatattctaaaacgacac 297063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 7259548 - 7259503
Alignment:
Q  13 aatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  7259548 aatatttagaaaattgaaaattgtttgttatgagagaaagataaag 7259503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 51 - 165
Target Start/End: Complemental strand, 3443444 - 3443328
Alignment:
Q  51 agataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag--nnnnnnntatgcaaaaatacacttcgttagttttgtgt 148  Q
    ||||||||| |||| |||  ||||||||||||||||||||||||||||||| ||||||||         | ||||||||||||||||| || ||||||||    
T  3443444 agataaagtgtgtgaaaaagaataggaaattattagtggattaaaatgagggtataataggaaaaaaagtgtgcaaaaatacacttcgctatttttgtgt 3443345  T
Q  149 taaaattctaaaacgac 165  Q
    |||||||||||||||||    
T  3443344 taaaattctaaaacgac 3443328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 9455590 - 9455720
Alignment:
Q  61 tgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtgttaaaattctaaa 160  Q
    |||||||| || || ||||||||||||| |||||||||||| ||||||||       | ||||||||||||||| | || ||||||||||||||| ||||    
T  9455590 tgtgcaaaaaagtaagaaattattagtgtattaaaatgagggtataatagaaaaaagtgtgcaaaaatacactttgctatttttgtgttaaaattttaaa 9455689  T
Q  161 acgacac--aaaaagaaacggagggagtaat 189  Q
    | |||||  ||||||||||||||||| ||||    
T  9455690 atgacacttaaaaagaaacggagggaataat 9455720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 7695021 - 7694959
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    |||||||||||| |||||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  7695021 aaaagataaagtgtgtgcaaaaaaataggaatttatttgtagattaaaatgaggatataatag 7694959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 166
Target Start/End: Original strand, 34039449 - 34039492
Alignment:
Q  123 aaaaatacacttcgttagttttgtgttaaaattctaaaacgaca 166  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||    
T  34039449 aaaaatacacttcattatttttgtgttaaaattctaaaacgaca 34039492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 34146765 - 34146826
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||| | |||||||| ||||| ||| ||||| |||||||||||||||| ||||||||    
T  34146765 aaagataaaatgtgtgcaaaaaaataagaatttattggtggattaaaatgagggtataatag 34146826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 2742635 - 2742601
Alignment:
Q  76 gaaattattagtggattaaaatgaggatataatag 110  Q
    |||||||||||||||||||||||||| ||||||||    
T  2742635 gaaattattagtggattaaaatgagggtataatag 2742601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 165
Target Start/End: Complemental strand, 7577882 - 7577837
Alignment:
Q  120 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgac 165  Q
    ||||||||||||||| | || |||| ||||||||||||||||||||    
T  7577882 tgcaaaaatacacttagctatttttatgttaaaattctaaaacgac 7577837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 7578045 - 7578000
Alignment:
Q  13 aatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    |||||||||||||||||||||||||||||  || | ||||||||||    
T  7578045 aatatttagaaaattaaaaattgtttgttaagagagaaagataaag 7578000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 9455456 - 9455501
Alignment:
Q  13 aatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||| ||||| ||||||| ||| ||||||||||||    
T  9455456 aatatttagaaaattgaaaatagtttgttatgagaaaaagataaag 9455501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 11087679 - 11087719
Alignment:
Q  70 aaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||| ||| ||||| |||||||||||||||||||||||||    
T  11087679 aaataagaatttattggtggattaaaatgaggatataatag 11087719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 14771157 - 14771015
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgt 146  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||        | || ||||||||||||   || ||||||    
T  14771157 aaaagataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgagggtataatagagaaaaagtgtgtaaaaatacactttactatttttgt 14771059  T
Q  147 gttaaaattctaaaac-gacac--aaaaagaaacggagggagta 187  Q
    |||||||||||||||| |||||  |||||| |||||||||||||    
T  14771058 gttaaaattctaaaactgacacttaaaaaggaacggagggagta 14771015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 15221609 - 15221467
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag-nnnnnnntatgcaaaaatacacttcgttagttttgt 146  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||        | || ||||||||||||   || ||||||    
T  15221609 aaaagataaagtgtgtgcaaa-aaataggaaattattagtggattaaaatgagggtataatagagaaaaagtgtgtaaaaatacactttactatttttgt 15221511  T
Q  147 gttaaaattctaaaac-gacac--aaaaagaaacggagggagta 187  Q
    |||||||||||||||| |||||  |||||| |||||||||||||    
T  15221510 gttaaaattctaaaactgacacttaaaaaggaacggagggagta 15221467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 39434444 - 39434586
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| |||||| | |||||||||||||||||| ||||||||| ||| ||||||| |       | ||||||||||||||||| || ||||||     
T  39434444 aaagataaagtgtgtgcacaaaaataggaaattattagtcgattaaaataagggtataataggaaaaaagtgtgcaaaaatacacttcgctatttttgta 39434543  T
Q  148 tt-aaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    || ||||||||||||||||||  |||||| |||||||||||||    
T  39434544 ttaaaaattctaaaacgacacttaaaaaggaacggagggagta 39434586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 4962676 - 4962536
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata-gnnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    ||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||||||| |       | || ||||||||| |||  || |||||||    
T  4962676 aaagataaagtgtgtgcaaa-aaataggaaattattagttgattaaaatgagggtataataggaaaaaagtgtgaaaaaatacatttcactatttttgtg 4962578  T
Q  148 ttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    |||||||||||||||| |||  |||||| |||||||||||||    
T  4962577 ttaaaattctaaaacggcacttaaaaaggaacggagggagta 4962536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 15643649 - 15643767
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtgt 148  Q
    ||||||||| | |||||||| |||||| ||||||||||||||||||||||||| |||||| |       | |||||||||||||||   || ||||||||    
T  15643649 aaagataaaatgtgtgcaaaaaaatagaaaattattagtggattaaaatgagggtataatcgtaaaaaatgtgcaaaaatacacttaactatttttgtgt 15643748  T
Q  149 taaaattctaaaacgacac 167  Q
    |||| ||||||||||||||    
T  15643749 taaatttctaaaacgacac 15643767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 3835377 - 3835316
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  3835377 aaagataaagtgtgtgcaaaaaaataggaatttattcgtggattaaaatgaggatataatag 3835316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 187
Target Start/End: Complemental strand, 46671757 - 46671618
Alignment:
Q  53 ataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag--nnnnnnntatgcaaaaatacacttcgttagttttgtgtt- 149  Q
    ||||||| |||||||| |||||| ||||||||||||| ||||||||||| ||||||||         | ||||||||||| ||| | || |||||||||     
T  46671757 ataaagtgtgtgcaaaaaaatagaaaattattagtggcttaaaatgagggtataataggaaaaaaattgtgcaaaaataccctttgctatttttgtgtta 46671658  T
Q  150 aaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    ||||||||||||||||||  |||||| |||||||||||||    
T  46671657 aaaattctaaaacgacacttaaaaaggaacggagggagta 46671618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 25290987 - 25291108
Alignment:
Q  70 aaataggaaattattagtggattaaaatgaggatataatagnnnnnnnta-tgcaaaaatacacttcgttagttttgtgtt-aaaattctaaaacgacac 167  Q
    |||||||||||||| |||||||||||||||||||  |||||          ||||||||||||||||| || ||||||||| ||||||||||||||||||    
T  25290987 aaataggaaattatcagtggattaaaatgaggatccaataggaaaaatgcgtgcaaaaatacacttcgctatttttgtgttaaaaattctaaaacgacac 25291086  T
Q  168 --aaaaagaaacggagggagta 187  Q
      |||||| |||||||||||||    
T  25291087 ttaaaaaggaacggagggagta 25291108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 24393746 - 24393682
Alignment:
Q  124 aaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    |||||||||||| ||| |||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  24393746 aaaatacacttcatta-ttttgtgttaaatttctaaaacgacacttaaaaagaaacggagggagta 24393682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 39430057 - 39429934
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag----nnnnnnntatgcaaaaatacacttcgttagttt 143  Q
    |||||||||||| |||||| | ||||||||||||| |||| ||||||||| ||| ||||||||           | ||||||||||||||||| || |||    
T  39430057 aaaagataaagtgtgtgcacaaaaataggaaattaatagttgattaaaataagggtataatagaaaaaaaaaagtgtgcaaaaatacacttcgctatttt 39429958  T
Q  144 tgtgttaaaattctaaaacgacac 167  Q
    |||||||||||| ||||| |||||    
T  39429957 tgtgttaaaattataaaatgacac 39429934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 39618185 - 39618246
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||| |||||||||| ||||| ||| ||||| |||||||||||||||| ||||||||    
T  39618185 aaagataaaatatgtgcaaaaaaataagaatttattggtggattaaaatgagggtataatag 39618246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 4678875 - 4678934
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata 109  Q
    ||||||||||| ||| |||| ||||| |||||| |||||||||||||||||||||||||||    
T  4678875 aaagataaagtgtgtacaaa-aaatatgaaattgttagtggattaaaatgaggatataata 4678934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 14771280 - 14771233
Alignment:
Q  11 ataatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  14771280 ataatatttagaaaattgaaaattgtttgttttgagagaaagataaag 14771233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 15221732 - 15221685
Alignment:
Q  11 ataatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  15221732 ataatatttagaaaattgaaaattgtttgttttgagagaaagataaag 15221685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 33258987 - 33259032
Alignment:
Q  122 caaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 167  Q
    |||||||||||||||||| ||| ||||||| |||||||||||||||    
T  33258987 caaaaatacacttcgttattttggtgttaatattctaaaacgacac 33259032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 109
Target Start/End: Complemental strand, 10534552 - 10534489
Alignment:
Q  46 taaaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataata 109  Q
    |||||| ||||| | |||||||| ||||||||| ||||| |||||||||||||| | |||||||    
T  10534552 taaaaaaataaaatgtgtgcaaaaaaataggaatttattggtggattaaaatgaaggtataata 10534489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 4567878 - 4567938
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||||||| ||||| ||| ||| | |||||||||||||||| ||||||||    
T  4567878 aaagataaagtgtgtgcaaa-aaataagaatttagtggtggattaaaatgagggtataatag 4567938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 16197346 - 16197406
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| | |||||| ||||||||| |||||  ||||||||||||||| ||||||||    
T  16197346 aaagataaagtttatgcaaa-aaataggaatttattgatggattaaaatgagggtataatag 16197406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 27062031 - 27061982
Alignment:
Q  118 tatgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 167  Q
    |||||||||||| ||||| ||| |||||||||| ||||| ||||||||||    
T  27062031 tatgcaaaaatatacttccttaattttgtgttacaattccaaaacgacac 27061982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 4678952 - 4678996
Alignment:
Q  123 aaaaatacacttcgttagttttgtgttaaaattctaaaacgacac 167  Q
    |||||||||||||| || ||||||||||||||| ||||| |||||    
T  4678952 aaaaatacacttcgctatttttgtgttaaaattataaaatgacac 4678996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 157
Target Start/End: Complemental strand, 48612 - 48503
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnntatgcaaaaatacacttcgttagttttgtg 147  Q
    |||| ||| ||| |||||||| |||||| ||||||||| ||||||||||||||| ||||||||       | || ||||||||| ||| | | |||||||    
T  48612 aaaaaatatagtgtgtgcaaaaaaatagaaaattattaatggattaaaatgagggtataatagaaaaaaatgtgtaaaaatacaattcataatttttgtg 48513  T
Q  148 ttaaaattct 157  Q
    ||||||||||    
T  48512 ttaaaattct 48503  T

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Target: scaffold1130 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold1130
Description:

Target: scaffold1130; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 187
Target Start/End: Original strand, 725 - 866
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatagnnnnnnn--tatgcaaaaatacacttcgttagttttgt 146  Q
    ||||||||| | | |||||| ||| |||||||||||||| ||||||| ||||| ||||||||         | |||||||||||||||  ||| |||| |    
T  725 aaagataaaatgtttgcaaaaaaa-aggaaattattagtagattaaattgagggtataataggaaaaaaagtgtgcaaaaatacacttttttatttttat 823  T
Q  147 gttaaaattctaaaacgacac--aaaaagaaacggagggagta 187  Q
    ||||||||| |||||||||||  |||||| |||||||||||||    
T  824 gttaaaattataaaacgacacttaaaaaggaacggagggagta 866  T

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Target: scaffold1130; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 601 - 648
Alignment:
Q  11 ataatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  601 ataatatttagaaaattgaaaattgtttgttatgagagaaagataaag 648  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 110
Target Start/End: Original strand, 257279 - 257341
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    |||||||||||| |||||||| ||||||||| |||||  |||||||| |||||| ||||||||    
T  257279 aaaagataaagtgtgtgcaaaaaaataggaatttattgatggattaatatgagggtataatag 257341  T

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Target: scaffold0005; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 48 - 110
Target Start/End: Complemental strand, 271989 - 271926
Alignment:
Q  48 aaaagataaagtatgtgcaaagaaatag-gaaattattagtggattaaaatgaggatataatag 110  Q
    |||||||||||| |||| ||| ||| |  |||||||||||||||||||||||||| ||||||||    
T  271989 aaaagataaagtgtgtgaaaaaaaaaaaagaaattattagtggattaaaatgagggtataatag 271926  T

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Target: scaffold0005; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 178
Target Start/End: Complemental strand, 271910 - 271850
Alignment:
Q  120 tgcaaaaatacacttcgttagttttgtgttaaaattctaaaacgacac--aaaaagaaacg 178  Q
    ||||||| ||||||| | || || ||||||||||||||||||||||||  |||||||||||    
T  271910 tgcaaaattacactttgctatttctgtgttaaaattctaaaacgacacttaaaaagaaacg 271850  T

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Target: scaffold0006 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 46166 - 46119
Alignment:
Q  11 ataatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  46166 ataatatttagaaaattgaaaattgtttgttatgagagaaagataaag 46119  T

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Target: scaffold0006; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 46448 - 46401
Alignment:
Q  11 ataatatttagaaaattaaaaattgtttgttttgataaaaagataaag 58  Q
    ||||||||||||||||| ||||||||||||| ||| | ||||||||||    
T  46448 ataatatttagaaaattgaaaattgtttgttatgaaagaaagataaag 46401  T

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Target: scaffold1986 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1986
Description:

Target: scaffold1986; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 638 - 699
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||||||||| |||| ||| |||||| || ||||| |||||||||||| ||| ||||||||    
T  638 aaagataaagtgtgtgtaaaaaaatagaaatttattggtggattaaaattagggtataatag 699  T

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Target: scaffold0841 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0841
Description:

Target: scaffold0841; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 4274 - 4213
Alignment:
Q  49 aaagataaagtatgtgcaaagaaataggaaattattagtggattaaaatgaggatataatag 110  Q
    ||||| ||||| |||||||| ||| |||||  |||| |||||||||||||||| ||||||||    
T  4274 aaagagaaagtgtgtgcaaaaaaaaaggaatatattggtggattaaaatgagggtataatag 4213  T

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