View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_6 (Length: 680)
Name: NF1358_low_6
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_6 |
 | |
|
| [»] scaffold0148 (1 HSPs) |
| | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 249 - 675
Target Start/End: Original strand, 15674194 - 15674620
Alignment:
| Q |
249 |
gctagtaagcaacaatatacgtaatcagtcaaaattcaataactgttagttttggatacaatgttccaatagtaacattactctaattcgacattacatt |
348 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15674194 |
gctagcaagcaacaatatacgtaatcagtcaaaattcaataactgttagttttggatacaatgttccaataataacattactctaattcgacattacatt |
15674293 |
T |
|
| Q |
349 |
atcaatacacaaacgattcaaatgagtgagtattgttgacgggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaa |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||| |
|
|
| T |
15674294 |
atcaatacacaaacgattcaaatgagtgagtattgttgacgggttaaaagatacattacctgtttcttgacgccaaatgagtgtagaaattttctagcaa |
15674393 |
T |
|
| Q |
449 |
tcattcttcattcttcaatgatttgagacctagattttgcacaaaaaactttgaaatttgatgtttttagatggaagaggaaaaaagttgaagtgtgttg |
548 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15674394 |
tcataattcattcttcaatgatttgagacctagattttgcacaaaaaactttgaaatttgaggtttttagatggaagaggaaaaaagttgaagtgtgttg |
15674493 |
T |
|
| Q |
549 |
ccattgtctagaaaatgttaggaacgacaatttactgcagttggcaaccgctaatgagccacaattaaccgctattgtgatctaaagacagttaactatc |
648 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15674494 |
ccatagtctagaaaatgttaggaacgacaatttactgcagttggcaacagctaacgagccacaagtaaccgctattgtgatctaaagacagttaactatc |
15674593 |
T |
|
| Q |
649 |
attgatggcattttgatattcttggag |
675 |
Q |
| |
|
|||||||||||||||||||| |||||| |
|
|
| T |
15674594 |
attgatggcattttgatatttttggag |
15674620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 15673241 - 15673461
Alignment:
| Q |
29 |
aaaaccaatgatgataggctattttgtcttggaaaattgctccttttcactttcaaaatgtctttcagacacttcaaaaatacaaaaacgtcttcggcgg |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
15673241 |
aaaaccaatgatgataggctattttgtcttggaaaattgctctttttcactttcaaaatgtctttgagacacttcaaaaatacaaaaacgtcttcggcgg |
15673340 |
T |
|
| Q |
129 |
tagttaaccgtcattgttccttgttatgcagtcgacaacacttataatgtcagccaagacacaaaacggtatatctgaacacctgtaactcataaacaaa |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
15673341 |
tagttaaccgtcattgttccttgttatgcagtcgacaacacttataatgtcagccaagacagaaaacggtatgtctaaacacctgtaactcataaacaaa |
15673440 |
T |
|
| Q |
229 |
attccaaaacgagtacaatcg |
249 |
Q |
| |
|
|||| |||||||||||||||| |
|
|
| T |
15673441 |
attcgaaaacgagtacaatcg |
15673461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 371
Target Start/End: Complemental strand, 35670636 - 35670590
Alignment:
| Q |
325 |
attactctaattcgacattacattatcaatacacaaacgattcaaat |
371 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||||| |||| |
|
|
| T |
35670636 |
attacactaattcaacattacattaacaatacacaaacgattgaaat |
35670590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 471 - 527
Target Start/End: Complemental strand, 37893862 - 37893807
Alignment:
| Q |
471 |
ttgagacctagattttgcacaaaaaactttgaaatttgatgtttttagatggaagag |
527 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
37893862 |
ttgagaccaagattttgcacaaaaaa-tttgaaatttggtgtttttagatggaagag |
37893807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 371
Target Start/End: Complemental strand, 8756508 - 8756458
Alignment:
| Q |
321 |
taacattactctaattcgacattacattatcaatacacaaacgattcaaat |
371 |
Q |
| |
|
||||||||| | |||||||||| |||||| |||||||||||| |||||||| |
|
|
| T |
8756508 |
taacattacaccaattcgacatgacattaacaatacacaaacaattcaaat |
8756458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 458
Target Start/End: Complemental strand, 33989 - 33922
Alignment:
| Q |
391 |
gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca |
458 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||| ||||||||| ||| || |||||||| |||| |
|
|
| T |
33989 |
gttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaaccttttaacaatcattattca |
33922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 441
Target Start/End: Complemental strand, 3761200 - 3761150
Alignment:
| Q |
391 |
gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatctt |
441 |
Q |
| |
|
|||||||||| |||||||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
3761200 |
gttaaaagatgcattacctgtttcttgacgtcaaatgtgtgtagaaatctt |
3761150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 13634308 - 13634241
Alignment:
| Q |
390 |
ggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca |
458 |
Q |
| |
|
||||||||||| |||||| | ||||| ||| |||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
13634308 |
ggttaaaagatgcattacatatttcttgacatcaaatgagtgtagaaa-cttttagcaatcattcttca |
13634241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 390 - 458
Target Start/End: Complemental strand, 13734721 - 13734653
Alignment:
| Q |
390 |
ggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattcttca |
458 |
Q |
| |
|
||||||||||| |||||| | ||||| ||| |||||||||||||||| || |||||||||||||||| |
|
|
| T |
13734721 |
ggttaaaagatgcattacatatttcttgacatcaaatgagtgtagaaactttctagcaatcattcttca |
13734653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 449
Target Start/End: Complemental strand, 7493774 - 7493716
Alignment:
| Q |
391 |
gttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaat |
449 |
Q |
| |
|
|||||||||| |||||| |||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
7493774 |
gttaaaagatgcattacacgtttcttgacgttaaatgagtgtagaaatcttttagcaat |
7493716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 14402540 - 14402598
Alignment:
| Q |
392 |
ttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatc |
450 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| |||||| ||||||||||| | |||||||| |
|
|
| T |
14402540 |
ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatc |
14402598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 455
Target Start/End: Complemental strand, 21138403 - 21138337
Alignment:
| Q |
389 |
gggttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatcattct |
455 |
Q |
| |
|
|||||||||||| |||||| ||||||| || | |||||| ||||||||| ||| |||||||| |||| |
|
|
| T |
21138403 |
gggttaaaagatgcattacttgtttcttgatgtcaaatgtgtgtagaaaccttctagcaatctttct |
21138337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 16313 - 16255
Alignment:
| Q |
392 |
ttaaaagatacattacctgtttctcgacgccaaatgagtgtagaaatcttgtagcaatc |
450 |
Q |
| |
|
|||||||||||| ||| ||||||| |||| |||||| ||||||||||| | |||||||| |
|
|
| T |
16313 |
ttaaaagatacactacatgtttcttgacgtcaaatgtgtgtagaaatcatctagcaatc |
16255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University