View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_62 (Length: 403)
Name: NF1358_low_62
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_62 |
 | |
|
| [»] scaffold0252 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 307
Target Start/End: Complemental strand, 27876444 - 27876145
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27876444 |
ccaataaaatcagaagtaagaaaatatctagctttaaataatcgacaaacaaggctactagaatcaatttggaacctccatccctgtttccctaacatag |
27876345 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
27876344 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaatttatgaacagacaaccttttctaagacatccaatgtaatctgcgacgcatatt |
27876245 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
307 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27876244 |
accgtcgtggccccaccaaaaagaattaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
27876145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 279
Target Start/End: Complemental strand, 15231258 - 15231070
Alignment:
| Q |
91 |
ctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgt |
190 |
Q |
| |
|
|||||| |||| ||||||||||||||||| || ||||||||||| |||||||||| |||| | |||| | || ||||||||| | |||||||||||| |
|
|
| T |
15231258 |
ctgtttgcctattatagccacattaaaagatgttaaatccttaaaccccatacctctaaaattcttatgatccgataacctttcccacgacatccaatgt |
15231159 |
T |
|
| Q |
191 |
aatccgcgacgcatattaccgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaa |
279 |
Q |
| |
|
|| || | |||| |||||| | | | || |||||||| || ||||||||||| ||||||||||| | |||||||| |||||||| |
|
|
| T |
15231158 |
aaccctctgcgcaaattaccaccattacgccaccaaaaagcatttatcattttttcaattgcatcaactaatttatttggcagtaaaaa |
15231070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 32894763 - 32894463
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
32894763 |
ccaataaaatcagaagtaggaaaatatctagctttaaataatcgacaaacaaggctactagaatcagtttggaacctccatccctgtttccctaacatag |
32894664 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32894663 |
ccacattaaaagaagtcaaatccttaaagcacatacctccaaaaaatttatgaacagacaacctttcccaagacatccaatgtaatccgcgacgcatatt |
32894564 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
307 |
Q |
| |
|
||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
32894563 |
accatcgtggccccaccaaaaagcattaatcattttttctattgcatcaacaagcttatttggaagtagaaagatgctcataatataagatgagatggat |
32894464 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
32894463 |
t |
32894463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 13107527 - 13107824
Alignment:
| Q |
7 |
tccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacata |
106 |
Q |
| |
|
|||||||| |||||| || ||| |||| || | || ||| |||||||||||| | ||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
13107527 |
tccaataaaatcagacttaggaagatatctatccttgaattatcgacaaacaagattgctagaatcactttggtacctccatccctgtttccctaacata |
13107626 |
T |
|
| Q |
107 |
gccacattaaaagaagtcaaatccttaaa-gcccatacctccaaaaaa-ttcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcat |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||| || ||||||| ||| |||||| || |||||||||||||||| ||| |||| |
|
|
| T |
13107627 |
gccacattaaaagaggtcaaatccttaaaagcccatacctccaaaaaaatttatgaacatgcaatctttcccaa-acatccaatgtaatccacgatgcat |
13107725 |
T |
|
| Q |
205 |
attaccgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggat |
303 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13107726 |
attaccgttgtggccccaccaaaaagcattaatcattttttctattgcatcaacaagcttatttggaagcaaaaagatgctcataatataagatgggat |
13107824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 25905711 - 25906011
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| ||||||| || |||| ||| |||| ||||||||||||||||||| | ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
25905711 |
ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagtttgctagactctgtttggaacctccatccctgtttccctaacatag |
25905810 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
||||||||||||| ||||||||||||| | |||| |||||||||| || ||||| |||||| |||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
25905811 |
ccacattaaaagaggtcaaatccttaatggccatgcctccaaaaattttatgaatagacaatctttcccaggacatccaatgtaatccacgacgcatatt |
25905910 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
307 |
Q |
| |
|
|||| | ||||| | ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||| |
|
|
| T |
25905911 |
accgccatggcctcaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaactgctcataatataagatgagattgat |
25906010 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
25906011 |
t |
25906011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 9957862 - 9957798
Alignment:
| Q |
84 |
tccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctcca |
148 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||| || | |||||||| |||||||||||| |
|
|
| T |
9957862 |
tccatccctgtttccccaacatagctaaattaaaagcagagaggtccttaaaacccatacctcca |
9957798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 18177893 - 18177592
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| ||||||| || |||||||| |||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| |||| |||||||| |
|
|
| T |
18177893 |
ccaataaaatcagaattaggaaaatatctagctttaaataatcgacaaacaaggctgctagaatcagtttggaacctccatccctgcttccttaacatag |
18177794 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
18177793 |
ccacattaaaagatgtcaaatccttaaagcccatacctccaaaaaaattatgaacagacaacctttcccaagacatcgaatgtaatccgcgacgcatatc |
18177694 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaa-gatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatgga |
306 |
Q |
| |
|
|||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
18177693 |
accgccgtggccccaccaaaaagggattaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcatgatataagatgggataga |
18177594 |
T |
|
| Q |
307 |
tt |
308 |
Q |
| |
|
|| |
|
|
| T |
18177593 |
tt |
18177592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 26952807 - 26953107
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| ||||||| || |||| ||| |||| ||||||||||||||||||| || ||||| || ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
26952807 |
ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagactgctagactctgtttggaacctccatctctgtttccctaacatag |
26952906 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||||| |||| |||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
26952907 |
ccacattaaaagaggtcaaatccttaaagcccatgcctccaaaatatttatgaacaaacaatctttcccaggacatccaatgtaatccacgacgcatatt |
26953006 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
307 |
Q |
| |
|
|||| | ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
26953007 |
accgccatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggattgat |
26953106 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
26953107 |
t |
26953107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 21277753 - 21277885
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| || |||||| |||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
21277753 |
ccaataaaataagaagtgggaaaatatctagctttaaataatcgacaaacaaggctactagaatcagtttggaacctccatccctgtttccctaacatag |
21277852 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagccca |
140 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
21277853 |
ccacattaaaagaggtcaaatccttaaagccca |
21277885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 21277940 - 21278013
Alignment:
| Q |
235 |
aatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggatt |
308 |
Q |
| |
|
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21277940 |
aataattttatctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatagatt |
21278013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 41 - 192
Target Start/End: Original strand, 9810115 - 9810266
Alignment:
| Q |
41 |
ttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagccca |
140 |
Q |
| |
|
||||| || ||| |||||| |||| | | ||||||||| | ||||| || ||||| |||||||||||||||||||||| ||||| || ||||||| || |
|
|
| T |
9810115 |
ttaaacaaacgagaaacaaggctagttggatcaatttgaaatctccaaccttgtttatctaacatagccacattaaaagatgtcaactcattaaagctca |
9810214 |
T |
|
| Q |
141 |
tacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaa |
192 |
Q |
| |
|
||||||||||||| | ||||||| | ||| ||||| |||||||||| ||||| |
|
|
| T |
9810215 |
tacctccaaaaaaattatgaacaaataacttttcccaagacatccagtgtaa |
9810266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 43219560 - 43219616
Alignment:
| Q |
92 |
tgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctcca |
148 |
Q |
| |
|
||||||||||||||||||| |||| ||| ||| ||||| ||||| ||||| |||||| |
|
|
| T |
43219560 |
tgtttccctaacatagccagattataagcagtaaaatctttaaatcccatgcctcca |
43219616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 28591320 - 28591620
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| ||||||| || |||| ||| |||| ||||||||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
28591320 |
ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagactgctagactctgtttggaacctccatccctgtttccctaacatag |
28591419 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
28591420 |
ccacattaaaagaggtcaaatccttaaagcccatgcctccaaaaaatttatgaacagacaatctttcccaggacatccaatgtaatccacgacgcatatt |
28591519 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
307 |
Q |
| |
|
|||||| ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
28591520 |
accgtcatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggattgat |
28591619 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
28591620 |
t |
28591620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 30303612 - 30303312
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| ||||||| || |||| ||| |||| ||||||||||||||||||| || ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
30303612 |
ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaagactgctagactctgtttggaacctccatccctgtttccctaacatag |
30303513 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||| |||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
30303512 |
ccacattaaaagaggtcaaatccttaaagctcatgcctccaaaaaatttatgaacagacaatctttcccaggacatccaatgtaatccacgacgcatatt |
30303413 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
307 |
Q |
| |
|
|||| | ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
30303412 |
accgccatggccccaccagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggattgat |
30303313 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
30303312 |
t |
30303312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 24869930 - 24869792
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| |||| || || ||||||| |||| ||||||||||||||||||| ||| || ||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
24869930 |
ccaataaaatcataattaggaaaataactagccttaaataatcgacaaacaagactattaaaatcagtttggaacctccatccctgtttccgtaacatag |
24869831 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctc |
146 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
24869830 |
ccacattaaaagaagtcaaatccttaaaactcatacctc |
24869792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 16042660 - 16042604
Alignment:
| Q |
92 |
tgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctcca |
148 |
Q |
| |
|
||||| ||||| ||||| | |||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
16042660 |
tgttttcctaagatagctagattaaaagcagtcaaatctttaaatcccatacctcca |
16042604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 3e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 1018085 - 1018385
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| ||||||| || |||| ||| |||| ||||||||||||||||||| ||| ||| ||||| ||||| || || |||||||||| |||||||||| |
|
|
| T |
1018085 |
ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaaggcttctataatcagtttggaacttctatccctgttttcctaacatag |
1018184 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |||||| | ||||||||||||||||| ||||||||||| |
|
|
| T |
1018185 |
ccacattaaaagaggtcaaatccttaaagcccatgcctccaaaaaatttatgaacagacaatctttcccaggacatccaatgtaatccacgacgcatatt |
1018284 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
307 |
Q |
| |
|
|||||| ||||||| ||| |||| |||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |
|
|
| T |
1018285 |
accgtcatggccccaccagaaagcattaaccaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgagattgat |
1018384 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
1018385 |
t |
1018385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 67 - 303
Target Start/End: Complemental strand, 42435692 - 42435456
Alignment:
| Q |
67 |
agaatcaatttggcacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagac |
166 |
Q |
| |
|
||||||| ||||| ||||||| || ||||| ||||||||||||||||||||||| |||| ||||||||| ||||| | ||||||| | ||||||| | |
|
|
| T |
42435692 |
agaatcagtttggaacctccaaccttgttttcctaacatagccacattaaaagatgtcagatccttaaaccccatgcatccaaaattcttatgaacaaat |
42435593 |
T |
|
| Q |
167 |
aacctttcctaagacatccaatgtaatccgcgacgcatattaccgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttat |
266 |
Q |
| |
|
|| |||||| |||||||||||||||| | | ||||||||||| || | |||| |||||| | || ||||||||||| ||||||||||| | |||| |
|
|
| T |
42435592 |
aatctttcccaagacatccaatgtaactctctgcgcatattaccatcattaccccaccaaaaggcatttatcattttttcaattgcatcaactaatttat |
42435493 |
T |
|
| Q |
267 |
ttggaagtaaaaagatgctcataatataagatgggat |
303 |
Q |
| |
|
|||| ||||||| || |||||||||||||||||||| |
|
|
| T |
42435492 |
ttggcagtaaaaggacactcataatataagatgggat |
42435456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 14505402 - 14505447
Alignment:
| Q |
103 |
catagccacattaaaagaagtcaaatccttaaagcccatacctcca |
148 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||||||||||||| |
|
|
| T |
14505402 |
catagccacattaaaagctgccaaatccttgaagcccatacctcca |
14505447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 23060709 - 23061009
Alignment:
| Q |
8 |
ccaataatatcagaagtaagaaaatatatagctttaaataatcgacaaacaaagctactagaatcaatttggcacctccatccctgtttccctaacatag |
107 |
Q |
| |
|
||||||| ||||||| || |||| ||| |||| ||||||||||||||||||| | | ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
23060709 |
ccaataaaatcagaattaggaaagtatctagccttaaataatcgacaaacaaggttgctagactctgtttggaacctccatccctgtttccctaacatag |
23060808 |
T |
|
| Q |
108 |
ccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcgacgcatatt |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||| || |||||||||||| |||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
23060809 |
ccacattaaaagaggtcaaatccttaaagcccatgcctccaaaaattttatgaacagacaatctttccaaggacatccaatgtaatccatgacgcatatt |
23060908 |
T |
|
| Q |
208 |
accgtcgtggcccctccaaaaagatttaatcattttttctattgcatcaacaagcttatttggaagtaaaaagatgctcataatataagatgggatggat |
307 |
Q |
| |
|
|||| | ||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
23060909 |
accgccatggccccatcagaaagcattaatcaatttttctattgcatcaacaagcttatttggaagtaaaaaaatgctcataatataagatgggattgat |
23061008 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
23061009 |
t |
23061009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 99 - 210
Target Start/End: Original strand, 37840227 - 37840338
Alignment:
| Q |
99 |
ctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagacatccaatgtaatccgcg |
198 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |||| | ||||||||||||| | ||| || |||||| ||||| |||||||||| ||||| || || |
|
|
| T |
37840227 |
ctaacatagacacattaaaagaggtcaaatccataaacctcatacctccaaaattgttatggacggacaacttttccaaagacatccagtgtaacccacg |
37840326 |
T |
|
| Q |
199 |
acgcatattacc |
210 |
Q |
| |
|
||| ||||||| |
|
|
| T |
37840327 |
tcgcgtattacc |
37840338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 20489873 - 20489771
Alignment:
| Q |
83 |
ctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagacaacctttcctaagaca |
182 |
Q |
| |
|
||||| || ||||| ||||||||||||| | ||||||| ||||| |||||||| | ||||||||||||| | | ||||||||||||| ||||| |||||| |
|
|
| T |
20489873 |
ctccaaccttgtttacctaacatagccataataaaagatgtcaagtccttaaacctcatacctccaaaacaattatgaacagacaacttttccaaagaca |
20489774 |
T |
|
| Q |
183 |
tcc |
185 |
Q |
| |
|
||| |
|
|
| T |
20489773 |
tcc |
20489771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 9815637 - 9815761
Alignment:
| Q |
68 |
gaatcaatttggcacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagaca |
167 |
Q |
| |
|
|||||| ||||| | ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||||||| | |||| |||| | |
|
|
| T |
9815637 |
gaatcagtttggaatctccaaccctgttttcctaacatagctacattaaaagatgtcaaatccttaaaccacatgcctccaaaattcttatgagcagata |
9815736 |
T |
|
| Q |
168 |
acctttcctaagacatccaatgtaa |
192 |
Q |
| |
|
|||||| | |||| ||| ||||||| |
|
|
| T |
9815737 |
accttttcgaagatatcaaatgtaa |
9815761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 192
Target Start/End: Original strand, 10717562 - 10717686
Alignment:
| Q |
68 |
gaatcaatttggcacctccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctccaaaaaattcatgaacagaca |
167 |
Q |
| |
|
|||||| ||||| | ||||| |||||||| ||||||||||| ||||||||||| |||||||||||||| | ||| ||||||||| | |||| |||| | |
|
|
| T |
10717562 |
gaatcagtttggaatctccaaccctgttttcctaacatagctacattaaaagatgtcaaatccttaaaccacatgcctccaaaattcttatgagcagata |
10717661 |
T |
|
| Q |
168 |
acctttcctaagacatccaatgtaa |
192 |
Q |
| |
|
|||||| | |||| ||| ||||||| |
|
|
| T |
10717662 |
accttttcgaagatatcaaatgtaa |
10717686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 6554 - 6490
Alignment:
| Q |
84 |
tccatccctgtttccctaacatagccacattaaaagaagtcaaatccttaaagcccatacctcca |
148 |
Q |
| |
|
|||||||||||||||| |||||||| | |||||||| || | |||||||| |||||||||||| |
|
|
| T |
6554 |
tccatccctgtttccccaacatagctaaattaaaagcagagaggtccttaaaacccatacctcca |
6490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University