View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_64 (Length: 400)
Name: NF1358_low_64
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_64 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 4417117 - 4416732
Alignment:
| Q |
1 |
gttggacacctgctatgagaccactcaaatgatagtcatgttagattgaatgagatgacctataaacaaacaagtaagggttgaattagacataaaccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4417117 |
gttggacacctgctatgagaccactcaaatcatagtcatgttagattgaatgagatgacctataaacaaacaagtaagggttgaattagacataaaccaa |
4417018 |
T |
|
| Q |
101 |
attctaacactaataaagcaagaaaaccatacatatacatactagcaattgcaacattattatactggttgagagaaagaacattatttaatgaatcata |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4417017 |
attctaacactaataaaggaagaaaaccatacatatacatactagcaattgcaacattattatactggttgagagaaagaacattatttaatgaatcata |
4416918 |
T |
|
| Q |
201 |
acaagagtgtgacttctgtcggtttggtctgatttaaatttattagcggagccggagtatgttgatccaccctcaaatctacttatgtgtatgcaataat |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4416917 |
acaagagtgtgacttctgtctgtttggtctgatttaaatttattagcggagccggagtatgttgatccaccctcaaatctacttatgtgtatgcaataat |
4416818 |
T |
|
| Q |
301 |
tgttaattgacttttaattaactgcatcttaaataatgtttactaattttcttgggtgaagggtctggtggtggttgctggtgtga |
386 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4416817 |
tgttaattgacttttaattaactgcatctcaaataatgtttactaattttcttgggtgaagggtctggtggtggttgctggtgtga |
4416732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University