View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_66 (Length: 395)

Name: NF1358_low_66
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_66
NF1358_low_66
[»] chr7 (4 HSPs)
chr7 (50-323)||(9352355-9352628)
chr7 (176-321)||(650308-650454)
chr7 (216-295)||(426515-426594)
chr7 (99-128)||(46766698-46766727)
[»] chr1 (2 HSPs)
chr1 (216-297)||(52596578-52596659)
chr1 (332-372)||(46424154-46424194)
[»] chr4 (1 HSPs)
chr4 (332-372)||(9452967-9453007)
[»] chr6 (1 HSPs)
chr6 (98-132)||(25100457-25100491)
[»] chr5 (1 HSPs)
chr5 (105-133)||(9634982-9635010)


Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 50 - 323
Target Start/End: Complemental strand, 9352628 - 9352355
Alignment:
Q  50 ggcgctattgaacaaaaggtgtaaaaggaaaatagcagtttgtcgatcacatatcgcggaacaatagccatttgttcaaattccagtacgcgctactatt 149  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9352628 ggcgctattgatcaaaaggcgtaaaaggaaaatagcagtttgtcgatcacatatcgcggaacaatagccatttgttcaaattccagtacgcgccactatt 9352529  T
Q  150 taacattgaaaatgaaaataatcagaagaaggatgttactctttcaaggtgttgtagaaaggaggatttgaattggcgaacaccacagccacttgaagta 249  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9352528 taacactgaaaaggaaaataatcagaagaaggatgttactctttcaaggtgttgtagaaaggcggatttgaattggcgaacaccacagccacttgaagta 9352429  T
Q  250 cagtccaacctgtgagctttctcaaaagcataaaagcgacctacaatacaataaaatcgaaatcaccaaacaaa 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9352428 cagtccaacctgtgagctttctcaaaagcataaaagcgacctacaatacaataaaatcgaaatcaccaaacaaa 9352355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 176 - 321
Target Start/End: Complemental strand, 650454 - 650308
Alignment:
Q  176 agaaggatgttactctttcaaggtgttgtagaaaggaggatttgaattggcgaacaccacagccacttgaagtacagtccaacc-tgtgagctttctcaa 274  Q
    ||||||||||||||||||||||| |||| |||||||  |  ||||||||||||||||||   ||||||||||||   || |||| | |||||||||||||    
T  650454 agaaggatgttactctttcaaggcgttgaagaaaggcagtcttgaattggcgaacaccatgaccacttgaagtaggatcaaaccttatgagctttctcaa 650355  T
Q  275 aagcataaaagcgacctacaatacaataaaatcgaaatcaccaaaca 321  Q
    | || ||||||| ||||||||| |||||| ||||| |||||||||||    
T  650354 aggcgtaaaagccacctacaatgcaataatatcgagatcaccaaaca 650308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 295
Target Start/End: Original strand, 426515 - 426594
Alignment:
Q  216 tttgaattggcgaacaccacagccacttgaagtacagtccaacctgtgagctttctcaaaagcataaaagcgacctacaa 295  Q
    ||||||||| ||||||||||  ||||| ||||||   || ||||| ||||||||||||||||||||||| ||||||||||    
T  426515 tttgaattgacgaacaccacgaccactagaagtaggatctaacctatgagctttctcaaaagcataaaatcgacctacaa 426594  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 128
Target Start/End: Complemental strand, 46766727 - 46766698
Alignment:
Q  99 catatcgcggaacaatagccatttgttcaa 128  Q
    ||||||||||||||||||||||||||||||    
T  46766727 catatcgcggaacaatagccatttgttcaa 46766698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 297
Target Start/End: Complemental strand, 52596659 - 52596578
Alignment:
Q  216 tttgaattggcgaacaccacagccacttgaagtacagtccaacctgtgagctttctcaaaagcataaaagcgacctacaata 297  Q
    ||||||||| ||||||||||  |||||||||||   ||||||||| ||||||||||||||||||||||| || |||||||||    
T  52596659 tttgaattgacgaacaccacgaccacttgaagtggggtccaacctatgagctttctcaaaagcataaaaccggcctacaata 52596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 46424194 - 46424154
Alignment:
Q  332 tgttgctcttttaagatgaagcggtgaattcattaaatata 372  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  46424194 tgttgctcttttaagatgaagcgatgaattcattaaatata 46424154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 372
Target Start/End: Complemental strand, 9453007 - 9452967
Alignment:
Q  332 tgttgctcttttaagatgaagcggtgaattcattaaatata 372  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  9453007 tgttgctcttttaagatgaagcggtaaattcattaaatata 9452967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 25100491 - 25100457
Alignment:
Q  98 acatatcgcggaacaatagccatttgttcaaattc 132  Q
    |||||||||||||||||||| ||||||||||||||    
T  25100491 acatatcgcggaacaatagcaatttgttcaaattc 25100457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 9634982 - 9635010
Alignment:
Q  105 gcggaacaatagccatttgttcaaattcc 133  Q
    |||||||||||||||||||||||||||||    
T  9634982 gcggaacaatagccatttgttcaaattcc 9635010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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