View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_67 (Length: 394)
Name: NF1358_low_67
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_67 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 20632550 - 20632934
Alignment:
| Q |
7 |
gaaatgaagcctaattagatacaggaagccagaatcaacttcgaaaaaccatgttagattgtaatttaaattgacaagttcaacccaatacggagccatg |
106 |
Q |
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| T |
20632550 |
gaaatgaagcctaattagatacaggaagccagaatcaacttcgaaaaaccatgttagattgtaatttaaattgacaaatccagcccaatacggagccatg |
20632649 |
T |
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| Q |
107 |
gaacgtgacgtgcggtagacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatc |
206 |
Q |
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| T |
20632650 |
gaacgcgacgtgcggtagacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcttattgaagtgtttaaaatcatatc |
20632749 |
T |
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| Q |
207 |
tcataaagatgtaaccatcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagt |
306 |
Q |
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| T |
20632750 |
ccccaaagatgtaaccatcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagt |
20632849 |
T |
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| Q |
307 |
ttccatagctgaatcattataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaa |
394 |
Q |
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| T |
20632850 |
ttccatagctgaatcattataaatgtaaacaa---ttgtatcgtggccagcgaaaggaataggggaatcatcaccaccaatgtataaa |
20632934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 7 - 394
Target Start/End: Original strand, 20648652 - 20649033
Alignment:
| Q |
7 |
gaaatgaagcctaattagatacaggaagccagaatcaacttcgaaaaaccatgttagattgtaatttaaattgacaagttcaacccaatacggagccatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
20648652 |
gaaatgaagcctaattagatacaggaagccagaatcaacttcgaaaaaccatgttagattgtaatttaaattgacag------cccaatacggagtcatg |
20648745 |
T |
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| Q |
107 |
gaacgtgacgtgcggtagacatcatcaggagcagtatactcgggaacatgatcagtatacaaaacttcaatgctcttattgaagcgtttaataccatatc |
206 |
Q |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||| ||||||| ||| | |
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| T |
20648746 |
gaacgcgacgtgcggtagacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcctattgaagggtttaatttcatcta |
20648845 |
T |
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| Q |
207 |
tcataaagatgtaaccatcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagt |
306 |
Q |
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| T |
20648846 |
ccccaaagatgtaaccatcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagt |
20648945 |
T |
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| Q |
307 |
ttccatagctgaatcattataaatgtaaacaacatttgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaa |
394 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
20648946 |
ttccatagctgaatcattataaatgtaaacaacttttgtatcgtggccaactaaaggaataggggaatcatcaccaccaatgtataaa |
20649033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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