View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_68 (Length: 389)
Name: NF1358_low_68
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_68 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 64 - 341
Target Start/End: Complemental strand, 23940950 - 23940673
Alignment:
| Q |
64 |
cttttaaggtgcttagagtttattgcattgctttagttagttttagactttgttttacattccttgttgatgctttactataaataaacattccttgtac |
163 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23940950 |
cttttaaggtgtttagagtttattgcattgctttagttagttttagactttgttttacattccttgttgatgctttactataaataaacattccttgtac |
23940851 |
T |
|
| Q |
164 |
tttgattatttgaatgaaaccaatatttcaccttacaagtggtatcagaggccttcattgggcattgtaactagagcttgaaaagtgcaacttttggcag |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23940850 |
tttgattatttgaatgaaaccaatatttcaccttacaagtggtatcagaggccttcattgggcattgtaactagagcttgaaaagtgcaacttttggcgg |
23940751 |
T |
|
| Q |
264 |
caaattcagttatgagttagttagattgatttgtttcttaaccaaccttcatctttcttctttgttcttccattgttc |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23940750 |
caaattcagttatgagttagttagattgatttgtttcttaaccaaccttcatctttcttctttgttcttccattgttc |
23940673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 23938541 - 23938488
Alignment:
| Q |
64 |
cttttaaggtgcttagagtttattgcattgctttagttagttttagactttgtt |
117 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| |||||||||||||||||| |||| |
|
|
| T |
23938541 |
ctttcaaggtgtttagagttgattgcattgttttagttagttttagactctgtt |
23938488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 23938454 - 23938371
Alignment:
| Q |
116 |
ttttacattccttgttgatgctttactataaataaacattccttgtactttgattatttgaatgaaaccaatatttcaccttaca |
200 |
Q |
| |
|
||||||| || ||||||||| ||||| ||| |||||| | ||||||||||||||| | |||||||||||||||| ||||||| |
|
|
| T |
23938454 |
ttttacactctttgttgatggtttac-atagataaacttctcttgtactttgattagataaatgaaaccaatatttacccttaca |
23938371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 44470506 - 44470566
Alignment:
| Q |
142 |
tataaataaacattccttgtactttgattatttgaatgaaaccaata-tttcaccttacaa |
201 |
Q |
| |
|
|||| |||| ||| |||||||||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
44470506 |
tatatataagcatcccttgtactttgtttaattgaatgaaaccaatattttcaccttacaa |
44470566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University