View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_71 (Length: 379)
Name: NF1358_low_71
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 182 - 372
Target Start/End: Complemental strand, 8880470 - 8880281
Alignment:
| Q |
182 |
ttgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttttagcttatgttctgcagctaacaaactcatagtt |
281 |
Q |
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| T |
8880470 |
ttgttagacaatgatttgtgtttggaagggaattctcatattctgcttattattaatgttaacttt-agcttgtgttctgcagctaacaaacttatagtt |
8880372 |
T |
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| Q |
282 |
ggatttattccgcagttatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatct |
372 |
Q |
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| T |
8880371 |
ggatttattccgcaggtatacatcctatgcaggtttatttccattgttgtcaagcgggctactgccattactcgaggttgaagaattatct |
8880281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 8884155 - 8884081
Alignment:
| Q |
298 |
tatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatct |
372 |
Q |
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| T |
8884155 |
tatacatcctttgccggtttatttccattgctttcgagcggactactgccattacttacggttgaagaaatatct |
8884081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 182 - 372
Target Start/End: Complemental strand, 45073611 - 45073422
Alignment:
| Q |
182 |
ttgttagacaatgatttgtgtttggaagggaa-ttctcatattctgcttattattaatgttaacttttagcttatgttctgcagctaacaaactcatagt |
280 |
Q |
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|||||||||||||||||||||||||||||||| || |||| |||||||||||||| | |||||||| || || ||||||||||||||||||||||| || |
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| T |
45073611 |
ttgttagacaatgatttgtgtttggaagggaacttatcatgttctgcttattattgacgttaactt--agtttgtgttctgcagctaacaaactcatggt |
45073514 |
T |
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| Q |
281 |
tggatttattccgcagttatacatcctatgcaggtttatttccattgttgtcaagtgggctactgccattactcgaggttgaagaattatct |
372 |
Q |
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| T |
45073513 |
tggatttattccgcaggtatacatcctatgcaggtttatttccattgctgtcaagtgggctactgccatttcttgaggttgaagaattatct |
45073422 |
T |
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