View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_72 (Length: 377)
Name: NF1358_low_72
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 29 - 370
Target Start/End: Original strand, 21466278 - 21466619
Alignment:
| Q |
29 |
acttggtgattgtgttaatctcaaaaaccttgacatttttgataataaccttagtggaaaccttcctattgaactagggaaactttcaaatcttgaagtt |
128 |
Q |
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| T |
21466278 |
acttggtgattgtgttaatctcaaaaaccttgacatttttgacaataaccttagtggaaaccttcctattgaactagggaaactttcaaatcttgaagtt |
21466377 |
T |
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| Q |
129 |
ataagagctggtggaaacaaagatattgtagggaagattccagaagagttaggtgaatgcaagaatttgactgttttaggacttgctgacactaaaattt |
228 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21466378 |
ataagagctggtggaaacaaagatattgtaggaaagattccagaagagttaggtgaatgcaagaatttgactgttttaggacttgctgacactaaaattt |
21466477 |
T |
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| Q |
229 |
caggttcattacctaattcattaggtaagttaaccatgcttcaaacaatatctatttatagtacttcaatttctggtgaaattcctcatgaaattggtaa |
328 |
Q |
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| T |
21466478 |
caggttcattacctaattcattaggtaaattaactatgcttcaaacaatatctatttatagtacttcaatttctggtgaaattcctcatgaaattggtaa |
21466577 |
T |
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| Q |
329 |
ctgttctgagctagtgagcttgtttttgtatgagaataatct |
370 |
Q |
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| T |
21466578 |
ctgttctgagcttgtgaacttgtttttgtatgagaatgatct |
21466619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 120 - 232
Target Start/End: Original strand, 20130394 - 20130506
Alignment:
| Q |
120 |
cttgaagttataagagctggtggaaacaaagatattgtagggaagattccagaagagttaggtgaatgcaagaatttgactgttttaggacttgctgaca |
219 |
Q |
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| T |
20130394 |
cttgaagttcttagagcaggtggaaataaagatatagttgggaagattcctgaagagattggtgaatgtagtaatttgactgttttagggcttgctgata |
20130493 |
T |
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| Q |
220 |
ctaaaatttcagg |
232 |
Q |
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| T |
20130494 |
ctagaatttcagg |
20130506 |
T |
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