View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_73 (Length: 369)
Name: NF1358_low_73
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 28 - 354
Target Start/End: Original strand, 52717655 - 52717981
Alignment:
| Q |
28 |
cagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacacagatgccaccagcaagtgtgatgacaag |
127 |
Q |
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| T |
52717655 |
cagtaaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacacagatgccaccagcaagtgtcatgacaag |
52717754 |
T |
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| Q |
128 |
actaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgtttggtctcttgtatcatttaggtatttc |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52717755 |
actaatcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgtttggtctcttgtatcatttaggtatttc |
52717854 |
T |
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| Q |
228 |
agtcatatataccaatccccnnnnnnntcttcaatctattaatttagtaactgctaattaatgatgtgcatgcatgcaggtttcacattgaaatgccatc |
327 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52717855 |
agtcatatataccaatccccaaaaaaatcttcaatctattaatttagtaactgctaattaatgatgttcatgcatgcaggtttcacattgaaatgccatc |
52717954 |
T |
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| Q |
328 |
cattgtaaaaggttccatctcaatact |
354 |
Q |
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||||||||||||||||||||||||||| |
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| T |
52717955 |
cattgtaaaaggttccatctcaatact |
52717981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 52712062 - 52712254
Alignment:
| Q |
32 |
aaagtctccatatattagccagaagaagatggacttggaaggaggaggggatgtaagcaaaaatacacagatgccaccagcaagtgtgatgacaagacta |
131 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||| ||| |
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| T |
52712062 |
aaagtctccatatattagccagaagaaggtggacttggaaggagttggggatgtaaacaaaaacaaacagatgccaccagcaagtgtgatgacaaaactc |
52712161 |
T |
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| Q |
132 |
atcctcatcatggtttggagaaaactcatcagaaatcctaatacctactcaagtcttataggacttgtttggtctcttgtatcatttaggtat |
224 |
Q |
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| T |
52712162 |
atcctcttcatggtttggagaaaactcatcagaaatcctaacacatacgcaagtcttatcggacttgtttggtctcttatatcatttgggtat |
52712254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 354
Target Start/End: Original strand, 52712349 - 52712401
Alignment:
| Q |
302 |
tgcaggtttcacattgaaatgccatccattgtaaaaggttccatctcaatact |
354 |
Q |
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|||||||| |||||||||||||| || |||||||| ||||||||||||||||| |
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| T |
52712349 |
tgcaggttgcacattgaaatgccctcgattgtaaacggttccatctcaatact |
52712401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 25040218 - 25040285
Alignment:
| Q |
102 |
atgccaccagcaagtgtgatgacaagactaatcctcatcatggtttggagaaaactcatcagaaatcc |
169 |
Q |
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||||||||||| |||||||||||||| || || | || ||||||||||||||||| ||||||||||| |
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| T |
25040218 |
atgccaccagctagtgtgatgacaaggcttatattgattatggtttggagaaaacttatcagaaatcc |
25040285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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