View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_77 (Length: 361)

Name: NF1358_low_77
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_77
NF1358_low_77
[»] chr1 (20 HSPs)
chr1 (80-351)||(25921705-25921976)
chr1 (218-348)||(43407087-43407217)
chr1 (230-339)||(9537120-9537229)
chr1 (230-348)||(338476-338594)
chr1 (241-351)||(8421941-8422051)
chr1 (253-348)||(37666898-37666993)
chr1 (70-321)||(18472635-18472889)
chr1 (230-351)||(33007368-33007489)
chr1 (70-168)||(43407209-43407306)
chr1 (249-331)||(16075129-16075211)
chr1 (253-331)||(35761741-35761820)
chr1 (280-331)||(6836394-6836445)
chr1 (260-328)||(28561815-28561885)
chr1 (317-348)||(9537068-9537099)
chr1 (216-270)||(6836292-6836346)
chr1 (317-346)||(338602-338631)
chr1 (260-297)||(26317617-26317654)
chr1 (317-346)||(37666861-37666890)
chr1 (317-346)||(43407050-43407079)
chr1 (260-331)||(19198451-19198523)
[»] chr2 (14 HSPs)
chr2 (70-227)||(41340069-41340226)
chr2 (217-351)||(18292411-18292545)
chr2 (70-348)||(28266832-28267114)
chr2 (231-349)||(40729146-40729264)
chr2 (250-348)||(41339973-41340071)
chr2 (104-323)||(12774137-12774360)
chr2 (218-351)||(34397536-34397667)
chr2 (230-348)||(40447849-40447967)
chr2 (80-318)||(35670502-35670743)
chr2 (217-331)||(44788931-44789053)
chr2 (217-297)||(29270997-29271078)
chr2 (260-321)||(36731900-36731961)
chr2 (317-346)||(40447975-40448004)
chr2 (317-346)||(40729110-40729139)
[»] chr7 (16 HSPs)
chr7 (218-348)||(10288511-10288641)
chr7 (217-351)||(12911410-12911544)
chr7 (245-351)||(40106193-40106299)
chr7 (218-351)||(12196413-12196547)
chr7 (218-346)||(49170023-49170153)
chr7 (70-331)||(48653534-48653798)
chr7 (253-351)||(11036063-11036162)
chr7 (253-348)||(15873695-15873790)
chr7 (70-168)||(10288633-10288730)
chr7 (253-321)||(22078066-22078135)
chr7 (255-321)||(9993756-9993822)
chr7 (253-321)||(21491194-21491264)
chr7 (309-351)||(40106295-40106338)
chr7 (309-350)||(11036025-11036067)
chr7 (317-346)||(10288474-10288503)
chr7 (317-346)||(15873658-15873687)
[»] chr3 (13 HSPs)
chr3 (218-348)||(7336414-7336544)
chr3 (253-348)||(5004440-5004535)
chr3 (253-351)||(16975710-16975809)
chr3 (253-348)||(46404321-46404416)
chr3 (257-351)||(43277763-43277853)
chr3 (70-168)||(7336536-7336633)
chr3 (253-321)||(9104571-9104640)
chr3 (309-346)||(16975805-16975843)
chr3 (317-346)||(5004403-5004432)
chr3 (317-346)||(7336377-7336406)
chr3 (241-270)||(17542462-17542491)
chr3 (270-325)||(8731213-8731269)
chr3 (270-325)||(9083100-9083156)
[»] chr4 (12 HSPs)
chr4 (241-351)||(55162533-55162643)
chr4 (79-351)||(13652749-13653024)
chr4 (79-351)||(13660874-13661149)
chr4 (217-348)||(40459306-40459437)
chr4 (236-351)||(28968956-28969076)
chr4 (249-327)||(2761801-2761879)
chr4 (309-351)||(55162639-55162681)
chr4 (217-331)||(69711-69833)
chr4 (253-331)||(49499492-49499572)
chr4 (216-270)||(69674-69728)
chr4 (309-346)||(55162677-55162715)
chr4 (317-346)||(40459445-40459474)
[»] scaffold1838 (2 HSPs)
scaffold1838 (218-351)||(542-675)
scaffold1838 (309-351)||(671-714)
[»] chr5 (14 HSPs)
chr5 (218-351)||(40691231-40691364)
chr5 (217-351)||(30910154-30910287)
chr5 (70-316)||(42861620-42861869)
chr5 (253-348)||(537211-537306)
chr5 (232-345)||(38001353-38001463)
chr5 (104-270)||(25101722-25101888)
chr5 (104-270)||(25160815-25160981)
chr5 (277-331)||(25101617-25101671)
chr5 (277-331)||(25160710-25160764)
chr5 (217-331)||(6309115-6309237)
chr5 (253-331)||(4557694-4557774)
chr5 (321-351)||(38001478-38001508)
chr5 (317-346)||(537314-537343)
chr5 (241-270)||(6309103-6309132)
[»] chr6 (9 HSPs)
chr6 (253-348)||(10751280-10751375)
chr6 (70-330)||(13773121-13773384)
chr6 (266-351)||(23260331-23260416)
chr6 (253-348)||(34636578-34636673)
chr6 (253-331)||(32449954-32450033)
chr6 (317-346)||(23260297-23260326)
chr6 (317-346)||(34636681-34636710)
chr6 (260-326)||(24163327-24163395)
chr6 (261-297)||(26182412-26182448)
[»] chr8 (11 HSPs)
chr8 (254-351)||(41958139-41958236)
chr8 (217-332)||(44436477-44436592)
chr8 (104-227)||(3189279-3189401)
chr8 (128-220)||(22635876-22635967)
chr8 (277-321)||(22635730-22635774)
chr8 (264-330)||(40841215-40841282)
chr8 (280-321)||(22816023-22816064)
chr8 (217-270)||(44436441-44436494)
chr8 (230-270)||(44436418-44436458)
chr8 (277-319)||(3189139-3189181)
chr8 (230-270)||(22816082-22816122)
[»] scaffold0041 (1 HSPs)
scaffold0041 (281-321)||(33038-33078)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 3e-64; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 80 - 351
Target Start/End: Original strand, 25921705 - 25921976
Alignment:
Q  80 aaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattg 179  Q
    ||||||||||||||  ||||||  |||||||| |||||||||||||| ||||||||||||||||| | ||| |||||  |||||||||| ||||||||||    
T  25921705 aaataataagaagaacaataagacttttatgagagatttcttttgtcatgtgcatgatgtggtattactttctgtgtgattgcctaagtggcggggattg 25921804  T
Q  180 catatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggcgggttttagtctt 278  Q
    | | |||||||||| |||| |||||||||||||||||||||||||||| ||||||| | | || ||||| |||||||||| |||| |||| ||| || |     
T  25921805 cctctatttttattatcatgacatatgcatttttggtgtgccttagtggtgggttaaacttataattctttgtggtgcctaagtgacgggattttgttta 25921904  T
Q  279 cattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||||| ||| ||| |||||||||| ||||    
T  25921905 cattttcatgatcatacatgacatatgcatctgtgtggtgccttagtggtggg-attacaattatattttgtg 25921976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 218 - 348
Target Start/End: Complemental strand, 43407217 - 43407087
Alignment:
Q  218 tgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 317  Q
    ||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  43407217 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggt 43407118  T
Q  318 gccttagtggcgggaattgcaattatattct 348  Q
    |||||||||||||||||||||||||||||||    
T  43407117 gccttagtggcgggaattgcaattatattct 43407087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 230 - 339
Target Start/End: Complemental strand, 9537229 - 9537120
Alignment:
Q  230 gggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcg 329  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  9537229 gggttataattatattctgtgtggtgccttagtggcgggttttagtctacattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtggcg 9537130  T
Q  330 ggaattgcaa 339  Q
    ||||||||||    
T  9537129 ggaattgcaa 9537120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 230 - 348
Target Start/End: Original strand, 338476 - 338594
Alignment:
Q  230 gggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcg 329  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  338476 gggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcg 338575  T
Q  330 ggaattgcaattatattct 348  Q
    ||| |||||||||||||||    
T  338576 ggatttgcaattatattct 338594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 8421941 - 8422051
Alignment:
Q  241 atattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaat 340  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  8421941 atattctgtgtggtgccttagcggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctatgtggtgccttagtggcggaaattgcaat 8422040  T
Q  341 tatattctgtg 351  Q
    |||||||||||    
T  8422041 tatattctgtg 8422051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 37666993 - 37666898
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 348  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37666993 gtgccttagtggcggattttagtctgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 37666898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 70 - 321
Target Start/End: Complemental strand, 18472889 - 18472635
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaa 166  Q
    ||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||| |||  | ||||| || | |||   || ||| | |||||||||    
T  18472889 tatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttctgtctggttgcctaa 18472790  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggc 265  Q
    || ||||| ||||||| |||||||||| |||| ||||| |||||||| |||||||||||||  |||||| | | || ||||| ||||||| || |||||     
T  18472789 gtggcggg-attgcatctatttttattatcatgacataagcattttttgtgtgccttagtggcgggttaaacttataattctctgtggtgtctaagtggt 18472691  T
Q  266 gggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgcct 321  Q
    ||| || |   | ||||||||||||||||||| ||||||||| |||||||||||||    
T  18472690 gggattcatgatccattttcatgatcatgcatagcatatgcatctgtgtggtgcct 18472635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 230 - 351
Target Start/End: Complemental strand, 33007489 - 33007368
Alignment:
Q  230 gggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcg 329  Q
    |||||||||| ||||||| ||||||| ||| |||| || ||||||||| ||||||||| ||||||||| ||||||||| ||||||||||| |||||||||    
T  33007489 gggttataattatattctatgtggtgtcttcgtggtggattttagtctacattttcataatcatgcatagcatatgcatctgtgtggtgctttagtggcg 33007390  T
Q  330 ggaattgcaattatattctgtg 351  Q
    ||||||||||||||||| ||||    
T  33007389 ggaattgcaattatattatgtg 33007368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 43407306 - 43407209
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagt 168  Q
    ||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||| |||||  ||||||||||    
T  43407306 tatcgaacataaataataggaagagaaataagttttc-atgaaagatttcttttgtcgtgtgtatgatgtggtattattttctgtgtgattgcctaagt 43407209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 16075129 - 16075211
Alignment:
Q  249 tgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    |||||||||| ||||||||| |||||  | ||||||||||||||||||||||| ||||| |||||||||| ||||||||||||    
T  16075129 tgtggtgcctgagtggcgggatttaggatgcattttcatgatcatgcatggcaaatgcatctgtgtggtgtcttagtggcggg 16075211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 35761820 - 35761741
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    |||||| ||||||||  |||| |||||||||||||||||||||| | ||||||||| |||||||||||||  ||||||||    
T  35761820 gtgcctaagtggcggaatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 35761741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 6836394 - 6836445
Alignment:
Q  280 attttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    |||||| ||||||||||||||||||||| |||||||||||||  ||||||||    
T  6836394 attttcctgatcatgcatggcatatgcatctgtgtggtgcctgtgtggcggg 6836445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 328
Target Start/End: Original strand, 28561815 - 28561885
Alignment:
Q  260 agtggcgggttttagtcttcattttcatgatcatgcatggcatatgca--cctgtgtggtgccttagtggc 328  Q
    ||||||||| |||| | ||||||||||||||||||||||  |||||||   ||||||||||||||||||||    
T  28561815 agtggcgggatttaattttcattttcatgatcatgcatgatatatgcatttctgtgtggtgccttagtggc 28561885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 348
Target Start/End: Complemental strand, 9537099 - 9537068
Alignment:
Q  317 tgccttagtggcgggaattgcaattatattct 348  Q
    ||||||||||||||||||||||||||||||||    
T  9537099 tgccttagtggcgggaattgcaattatattct 9537068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 6836292 - 6836346
Alignment:
Q  216 tgtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggtt 270  Q
    ||||||| ||||  ||||||  || ||||||||||||||||||||||||||||||    
T  6836292 tgtgcctaagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 6836346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 338602 - 338631
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  338602 tgccttagtggcgggaattgcaattatatt 338631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 297
Target Start/End: Original strand, 26317617 - 26317654
Alignment:
Q  260 agtggcgggttttagtcttcattttcatgatcatgcat 297  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  26317617 agtggcggaatttagtcttcattttcatgatcatgcat 26317654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 37666890 - 37666861
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  37666890 tgccttagtggcgggaattgcaattatatt 37666861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 43407079 - 43407050
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  43407079 tgccttagtggcgggaattgcaattatatt 43407050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 19198523 - 19198451
Alignment:
Q  260 agtggcgggttttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    ||||||||  |||| |||||||||| ||||||||||| |  |||||||| |||||||||||||  ||||||||    
T  19198523 agtggcggaatttaatcttcatttttatgatcatgcattaacatatgcatctgtgtggtgcctgtgtggcggg 19198451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 70 - 227
Target Start/End: Complemental strand, 41340226 - 41340069
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagtt 169  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||| |||||||    
T  41340226 tatcgaacagaaataataataagagaaataagctttttatgaaagattttttttgtcgtgtgcatgatgtggtattattttctgtgtggttgtctaagtt 41340127  T
Q  170 gcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtg 227  Q
    | ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  41340126 gtggggattgcatatatttttattctcataatatgtgcatttttggtgtgccttagtg 41340069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 217 - 351
Target Start/End: Complemental strand, 18292545 - 18292411
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg 316  Q
    |||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18292545 gtgccttagtggcgggttataattatattttgtgtggtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtgg 18292446  T
Q  317 tgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||||||||||||||||||||||||||||||    
T  18292445 tgccttagtggcgggaattgcaattatattctgtg 18292411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 70 - 348
Target Start/End: Complemental strand, 28267114 - 28266832
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaa 166  Q
    |||||||| |||||||||||||| ||||| ||   |||||||||||||||||||||| ||| |||||||| || | |||   || ||||| |||||||||    
T  28267114 tatcgaactaaaataataagaagggaaatgagccctttatgaaagatttcttttgtcatgtacatgatgttgtgttattactttctgtgtggttgcctaa 28267015  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcatatt-ctgtgtggtgccttagtggc 265  Q
    || |||| |||||||| |||||||||| |||| ||||| ||||||||||||||||||||||  ||  ||  |||||||| |  ||| ||||||  |||||    
T  28267014 gtggcggagattgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcggcataatatcatattgcattgttgtgcctgtgtggc 28266915  T
Q  266 gggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg-tgccttagtggcgggaattgcaattatattct 348  Q
    ||| ||||||||||||||| |||||||||||||||||||||| || ||||| || |||||||||||| ||| ||||||||||||    
T  28266914 gggatttagtcttcattttaatgatcatgcatggcatatgcatctatgtggatgtcttagtggcggg-attacaattatattct 28266832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 231 - 349
Target Start/End: Complemental strand, 40729264 - 40729146
Alignment:
Q  231 ggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgg 330  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  40729264 ggttataattatattctgtgtggtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggtgg 40729165  T
Q  331 gaattgcaattatattctg 349  Q
     ||||||||||||||||||    
T  40729164 aaattgcaattatattctg 40729146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 41340071 - 41339973
Alignment:
Q  250 gtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 348  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41340071 gtggtgccttagtggcgggttttagtcttcattttcatgaccatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 41339973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 104 - 323
Target Start/End: Complemental strand, 12774360 - 12774137
Alignment:
Q  104 ttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataa 200  Q
    ||||||||||||||||||||||| ||| |||||||| |||| |||   || ||||| ||||||||||| ||||||||||||| | |||||||| |||| |    
T  12774360 ttttatgaaagatttcttttgtcatgtacatgatgttgtattattactttctgtgtggttgcctaagtggcggggattgcatctgtttttattatcatga 12774261  T
Q  201 catatgcatttttggtgtgccttagtgttgggttataatcatat-tctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatgg 299  Q
    |||| |||||| |||||||||||||||  ||| ||  ||||||| ||| |||||||||| ||||||||| || |   ||||||||||||||||||||| |    
T  12774260 cataagcatttgtggtgtgccttagtggcgggataatatcatatctctttgtggtgcctaagtggcgggattcatgattcattttcatgatcatgcatcg 12774161  T
Q  300 catatgcacctgtgtggtgcctta 323  Q
    |||||||| |||||||||||||||    
T  12774160 catatgcatctgtgtggtgcctta 12774137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 34397667 - 34397536
Alignment:
Q  218 tgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 317  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||||| |||||||||    
T  34397667 tgccttagtggcgggttataattatattctgtgtggtgccttagtggcgggttttagtctgcatt--catgatcatgcatggtatatgcatctgtgtggt 34397570  T
Q  318 gccttagtggcgggaattgcaattatattctgtg 351  Q
    ||||||||||| | ||||||||||||||||||||    
T  34397569 gccttagtggcagaaattgcaattatattctgtg 34397536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 230 - 348
Target Start/End: Original strand, 40447849 - 40447967
Alignment:
Q  230 gggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcg 329  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  40447849 gggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatgtcatatgcatctgtgtggtgccttagtggcg 40447948  T
Q  330 ggaattgcaattatattct 348  Q
    ||| |||||||||||||||    
T  40447949 ggatttgcaattatattct 40447967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 80 - 318
Target Start/End: Complemental strand, 35670743 - 35670502
Alignment:
Q  80 aaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaagttgcgggga 176  Q
    |||||||||| ||| |||| ||  ||||||||||||||||||||||| |||  | ||||| || | |||   || ||||| ||||||||||| ||||| |    
T  35670743 aaataataagcagataaatgagccttttatgaaagatttcttttgtcatgtataagatgtcgtgttattactttctgtgtggttgcctaagtggcggg-a 35670645  T
Q  177 ttgcatatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggcgggttttagt 275  Q
    |||||| |||||||||| |||| ||||| | ||||||||||||||||||||  |||||| | | || ||||| ||||||||||  |||||||| || |      
T  35670644 ttgcatctatttttattatcatgacataagaatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggcgggattcatg 35670545  T
Q  276 cttcattttcatgatcatgcatggcatatgcacctgtgtggtg 318  Q
     | ||||||||||||||||||| ||||||||| ||||||||||    
T  35670544 atccattttcatgatcatgcatagcatatgcatctgtgtggtg 35670502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 331
Target Start/End: Original strand, 44788931 - 44789053
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcggg--------ttttagtcttcattttcatgatcatgcatggcatatgcac 308  Q
    |||||||||||  |||||| ||| ||||||||||||||||||||||||||||         | | |  || ||||||||||||||||| ||||||||||     
T  44788931 gtgccttagtggagggttacaattatattctgtgtggtgccttagtggcgggctaatatcatattgcatttattttcatgatcatgcaaggcatatgcat 44789030  T
Q  309 ctgtgtggtgccttagtggcggg 331  Q
    |||||||||||||  ||||||||    
T  44789031 ctgtgtggtgcctgtgtggcggg 44789053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 29270997 - 29271078
Alignment:
Q  217 gtgccttagtgttgggttataatcatatt-ctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcat 297  Q
    ||||||||||| |||||||  |||||||| || || ||||||| |||| |||| |||| | |||||||||||||||||||||    
T  29270997 gtgccttagtggtgggttaatatcatattgctttggggtgcctaagtgacgggatttaattttcattttcatgatcatgcat 29271078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 321
Target Start/End: Complemental strand, 36731961 - 36731900
Alignment:
Q  260 agtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgcct 321  Q
    ||||||||| |||||| || ||| |||| |||||||||||||||||||  |||||| |||||    
T  36731961 agtggcgggatttagtttttattatcattatcatgcatggcatatgcatttgtgtgctgcct 36731900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 40447975 - 40448004
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  40447975 tgccttagtggcgggaattgcaattatatt 40448004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 40729139 - 40729110
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  40729139 tgccttagtggcgggaattgcaattatatt 40729110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 218 - 348
Target Start/End: Complemental strand, 10288641 - 10288511
Alignment:
Q  218 tgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 317  Q
    ||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  10288641 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggt 10288542  T
Q  318 gccttagtggcgggaattgcaattatattct 348  Q
    |||||||||||||||||||||||||||||||    
T  10288541 gccttagtggcgggaattgcaattatattct 10288511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 217 - 351
Target Start/End: Complemental strand, 12911544 - 12911410
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg 316  Q
    |||||| ||||  |||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||||||||| ||||||||    
T  12911544 gtgcctaagtggcgggttataattatattctgtgtggtaccttagtggcgggttttagtctgcattttcataatcatgtatggcatatgcatctgtgtgg 12911445  T
Q  317 tgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||||||  ||||||||||||||||||||||    
T  12911444 tgccttagtggtaggaattgcaattatattctgtg 12911410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 245 - 351
Target Start/End: Original strand, 40106193 - 40106299
Alignment:
Q  245 tctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattata 344  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  40106193 tctgtgtggtgccttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaatcgcaattata 40106292  T
Q  345 ttctgtg 351  Q
    |||||||    
T  40106293 ttctgtg 40106299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 218 - 351
Target Start/End: Complemental strand, 12196547 - 12196413
Alignment:
Q  218 tgccttagtgttgggttataatcatat-tctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg 316  Q
    |||||||||| |||||||  || |||| |||||||||||||||||||||||  |||||||| ||||||||||||||| |||||||||| || ||||||||    
T  12196547 tgccttagtggtgggttaatattatatatctgtgtggtgccttagtggcggactttagtctgcattttcatgatcatacatggcatattcatctgtgtgg 12196448  T
Q  317 tgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||||||||||||||||||||||||||||||    
T  12196447 tgccttagtggcgggaattgcaattatattctgtg 12196413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 218 - 346
Target Start/End: Complemental strand, 49170153 - 49170023
Alignment:
Q  218 tgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg- 316  Q
    ||||||||||  ||||| |||| ||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||     
T  49170153 tgccttagtggcgggttgtaattatattctgtgtggtgtcttagtggcggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtgga 49170054  T
Q  317 tgccttagtgg-cgggaattgcaattatatt 346  Q
    ||||||||||| |||||||||||||||||||    
T  49170053 tgccttagtggccgggaattgcaattatatt 49170023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 70 - 331
Target Start/End: Complemental strand, 48653798 - 48653534
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatt---ttttgtgtagttgcctaa 166  Q
    ||||||||  ||||||||||||||||||| ||  |||||||||||||||||||| || |||  | ||||| || | |||   || ||||| |||||||||    
T  48653798 tatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttatcatgtataagatgttgtgttattactttctgtgtggttgcctaa 48653699  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggc 265  Q
    || ||||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||||  |||||| | | || ||||| |||||||||| ||||||    
T  48653698 gtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgcctaagtggc 48653600  T
Q  266 gggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    ||| || |   | |||||||||||||||||||  |||||||| |||||||||| ||  ||||||||    
T  48653599 gggattcatgatccattttcatgatcatgcataacatatgcatctgtgtggtgtctgtgtggcggg 48653534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 351
Target Start/End: Complemental strand, 11036162 - 11036063
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatg-gcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  11036162 gtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctctgtggtgccttagtggcgggaattgcaattatattctgtg 11036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 15873790 - 15873695
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 348  Q
    ||||||||||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  15873790 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 15873695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 10288730 - 10288633
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagt 168  Q
    ||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||| |||||  ||||||||||    
T  10288730 tatcgaacataaataataggaagagaaataagttttc-atgaaagatttcttttgtcgtgtgtatgatgtggtattattttctgtgtgattgcctaagt 10288633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 22078066 - 22078135
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgcct 321  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  22078066 gtgcctaagtggcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 22078135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 9993756 - 9993822
Alignment:
Q  255 gccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgcct 321  Q
    |||| ||||||||| |||||| |||||| |||| |||||||||||||||||||| | ||||||||||    
T  9993756 gcctaagtggcgggatttagttttcattatcattatcatgcatggcatatgcacgtttgtggtgcct 9993822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 321
Target Start/End: Complemental strand, 21491264 - 21491194
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcatt-ttcatgatcatgcatg-gcatatgcacctgtgtggtgcct 321  Q
    |||||| |||||| || ||||||||||||| |||||||||||||||  ||||||||| |||||||||||||    
T  21491264 gtgcctaagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcct 21491194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 40106295 - 40106338
Alignment:
Q  309 ctgtgtgg-tgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  40106295 ctgtgtggatgccttagtggcaggaattgcaattatattctgtg 40106338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 11036067 - 11036025
Alignment:
Q  309 ctgtgtgg-tgccttagtggcgggaattgcaattatattctgt 350  Q
    |||||||| |||||||||||||||||||||||||||| |||||    
T  11036067 ctgtgtggatgccttagtggcgggaattgcaattatactctgt 11036025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 10288503 - 10288474
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  10288503 tgccttagtggcgggaattgcaattatatt 10288474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 15873687 - 15873658
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  15873687 tgccttagtggcgggaattgcaattatatt 15873658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 218 - 348
Target Start/End: Complemental strand, 7336544 - 7336414
Alignment:
Q  218 tgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 317  Q
    ||||| |||| ||||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||    
T  7336544 tgcctaagtggtgggttataattatattttgtgtggtgccttagtggcgggttttagtttgcattttcatgatcatgcatggcatatgcatctgtgtggt 7336445  T
Q  318 gccttagtggcgggaattgcaattatattct 348  Q
    |||||||||||||||||||||||||||||||    
T  7336444 gccttagtggcgggaattgcaattatattct 7336414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 5004535 - 5004440
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 348  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5004535 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattct 5004440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 351
Target Start/End: Original strand, 16975710 - 16975809
Alignment:
Q  253 gtgccttagtggcggg-ttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||| ||||||||| ||||||||| ||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  16975710 gtgcctaagtggcggggttttagtctgcattttcatgatcatccatggcatatgcatctgtgtggtgccatagtggcgggaattgcaattatattctgtg 16975809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 46404416 - 46404321
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 348  Q
    ||||||||||||||||||||||| | |||||||||| |  ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  46404416 gtgccttagtggcgggttttagtgtgcattttcatgtttgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 46404321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 43277853 - 43277763
Alignment:
Q  257 cttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||||||||||||||    |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  43277853 cttagtggcgggttttagt----attttcatgatcatacatgacatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtg 43277763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 7336633 - 7336536
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagt 168  Q
    ||||||||| |||||||| |||||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||| |||||  ||||||||||    
T  7336633 tatcgaacataaataataggaagagaaataagttttc-atgaaagatttcttttgtcgtgtgtatgatgtggtattattttctgtgtgattgcctaagt 7336536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 9104571 - 9104640
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgcct 321  Q
    |||||| ||||||| | ||||||||||||||||||||||||||| | ||||||||| |||||||||||||    
T  9104571 gtgcctaagtggcgtgatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcct 9104640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 16975805 - 16975843
Alignment:
Q  309 ctgtgtgg-tgccttagtggcgggaattgcaattatatt 346  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  16975805 ctgtgtggatgccttagtggcgggaattgcaattatatt 16975843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 5004432 - 5004403
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  5004432 tgccttagtggcgggaattgcaattatatt 5004403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 7336406 - 7336377
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  7336406 tgccttagtggcgggaattgcaattatatt 7336377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Complemental strand, 17542491 - 17542462
Alignment:
Q  241 atattctgtgtggtgccttagtggcgggtt 270  Q
    ||||||||||||||||||||||||||||||    
T  17542491 atattctgtgtggtgccttagtggcgggtt 17542462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 8731213 - 8731269
Alignment:
Q  270 tttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagt 325  Q
    ||||||||||||||||||||||||||| | |||||  || || ||||||||||||||    
T  8731213 tttagtcttcattttcatgatcatgcattagcataaacatctatgtggtgccttagt 8731269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 325
Target Start/End: Original strand, 9083100 - 9083156
Alignment:
Q  270 tttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagt 325  Q
    ||||||||||||||||||||||||||| | |||||  || || ||||||||||||||    
T  9083100 tttagtcttcattttcatgatcatgcattagcataaacatctatgtggtgccttagt 9083156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 55162533 - 55162643
Alignment:
Q  241 atattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaat 340  Q
    ||||||||||||||||||| ||| ||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  55162533 atattctgtgtggtgccttggtgacggattttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaat 55162632  T
Q  341 tatattctgtg 351  Q
    |||||||||||    
T  55162633 tatattctgtg 55162643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 351
Target Start/End: Original strand, 13652749 - 13653024
Alignment:
Q  79 aaaataataagaagagaaa-taagttttttatgaaagatttcttttgtcgtgtgcatgat---gtggtataattttttgtgtagttgcctaagttgcggg 174  Q
    ||||||||||||||||||| ||||  ||| ||| ||||  ||||||||| ||||||||||   ||| ||| |||||||||||  |||||| ||| |||||    
T  13652749 aaaataataagaagagaaaataagacttt-atggaagacctcttttgtcatgtgcatgataatgtgctattattttttgtgtgattgccttagtggcggg 13652847  T
Q  175 gattgcatatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggcgggtttta 273  Q
    |||||||| ||  |||||| || | ||||||| ||||  |||||||||| |||  |||||| | | || ||||| |||||| ||| ||||||||||||||    
T  13652848 gattgcatctacctttattatcgtgacatatgtattt--ggtgtgcctttgtggcgggttaaacttattattctttgtggtacctaagtggcgggtttta 13652945  T
Q  274 gtctt-cattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    ||||| ||||||||||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||| ||||    
T  13652946 gtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattatattttgtg 13653024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 351
Target Start/End: Original strand, 13660874 - 13661149
Alignment:
Q  79 aaaataataagaagagaaa-taagttttttatgaaagatttcttttgtcgtgtgcatgat---gtggtataattttttgtgtagttgcctaagttgcggg 174  Q
    ||||||||||||||||||| ||||  ||| ||| ||||  ||||||||| ||||||||||   ||| ||| |||||||||||  |||||| ||| |||||    
T  13660874 aaaataataagaagagaaaataagacttt-atggaagacctcttttgtcatgtgcatgataatgtgctattattttttgtgtgattgccttagtggcggg 13660972  T
Q  175 gattgcatatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggcgggtttta 273  Q
    |||||||| ||  |||||| || | ||||||| ||||  |||||||||| |||  |||||| | | || ||||| |||||| ||| ||||||||||||||    
T  13660973 gattgcatctacctttattatcgtgacatatgtattt--ggtgtgcctttgtggcgggttaaacttattattctttgtggtacctaagtggcgggtttta 13661070  T
Q  274 gtctt-cattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    ||||| ||||||||||||||||||||| |||||||  |||||||||||||||||||| |||||||||||||||| ||||    
T  13661071 gtcttgcattttcatgatcatgcatggtatatgcatttgtgtggtgccttagtggcgagaattgcaattatattttgtg 13661149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 217 - 348
Target Start/End: Original strand, 40459306 - 40459437
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg 316  Q
    |||||| ||||  |||||||||| ||||||| ||| ||||||||||||||||||||||  | |||||||||||||||||||| |||||||| ||||||||    
T  40459306 gtgcctaagtggcgggttataattatattctatgttgtgccttagtggcgggttttaggttgcattttcatgatcatgcatgtcatatgcatctgtgtgg 40459405  T
Q  317 tgccttagtggcgggaattgcaattatattct 348  Q
    |||||||||||||||| |||||||||||||||    
T  40459406 tgccttagtggcgggatttgcaattatattct 40459437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 351
Target Start/End: Complemental strand, 28969076 - 28968956
Alignment:
Q  236 taatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcat-----atgcacctgtgtggtgccttagtggcgg 330  Q
    |||| ||||||||||||||||||||||||  ||||||| ||| ||||||||||||||||||||||||     ||||| ||||||||||||||||||||||    
T  28969076 taattatattctgtgtggtgccttagtggtaggttttaatctgcattttcatgatcatgcatggcatggcatatgcatctgtgtggtgccttagtggcgg 28968977  T
Q  331 gaattgcaattatattctgtg 351  Q
    |||||||||||||||| ||||    
T  28968976 gaattgcaattatattttgtg 28968956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 249 - 327
Target Start/End: Complemental strand, 2761879 - 2761801
Alignment:
Q  249 tgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtgg 327  Q
    |||||||| | ||||| ||| |||||  |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  2761879 tgtggtgcttaagtggtgggatttaggattcattttcatgatcatgcatggcatatgcatttgtgtggtgccttagtgg 2761801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 55162639 - 55162681
Alignment:
Q  309 ctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  55162639 ctgtgtggtgccttagtggcgggaattgcaattatattctgtg 55162681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 217 - 331
Target Start/End: Original strand, 69711 - 69833
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtc--------ttcattttcatgatcatgcatggcatatgcac 308  Q
    |||||||||||  ||||||  || ||||||||||||||||||||||||||||||    ||        || ||||||||||||||||||||||||||||     
T  69711 gtgccttagtggcgggttacgattatattctgtgtggtgccttagtggcgggttaatatcatattgcatttattttcatgatcatgcatggcatatgcat 69810  T
Q  309 ctgtgtggtgccttagtggcggg 331  Q
    |||||||||||||  ||||||||    
T  69811 ctgtgtggtgcctgtgtggcggg 69833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 49499492 - 49499572
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcatt-ttcatgatcatgcatg-gcatatgcacctgtgtggtgccttagtggcggg 331  Q
    |||||| |||||| || ||||||||||||| |||||||||||||||  ||||||||| |||||||||||||  ||||||||    
T  49499492 gtgcctaagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 49499572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 69674 - 69728
Alignment:
Q  216 tgtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggtt 270  Q
    ||||||| ||||  ||||||  || ||||||||||||||||||||||||||||||    
T  69674 tgtgcctaagtggcgggttactattatattctgtgtggtgccttagtggcgggtt 69728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 55162677 - 55162715
Alignment:
Q  309 ctgtgtgg-tgccttagtggcgggaattgcaattatatt 346  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  55162677 ctgtgtggatgccttagtggcgggaattgcaattatatt 55162715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 40459445 - 40459474
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  40459445 tgccttagtggcgggaattgcaattatatt 40459474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 542 - 675
Alignment:
Q  218 tgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 317  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||  |||||| |    
T  542 tgccttagtggcgggttataattatattctgtgtggtgccttagtggcgagttttagtctgcattttcatgatcatgaaaggcatatgcatttgtgtgat 641  T
Q  318 gccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||||| |||||||||||||||| ||||||    
T  642 gccttagtggtgggaattgcaattatagtctgtg 675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 671 - 714
Alignment:
Q  309 ctgtgtgg-tgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  671 ctgtgtggatgccttagtggcgggaattgcaattatattctgtg 714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 40691231 - 40691364
Alignment:
Q  218 tgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggt 317  Q
    ||||||||||  ||||| | || ||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |||||||||    
T  40691231 tgccttagtggcgggttgtgattatattatgtgtggtgccttagtgacgggttttagtctgcattttcatgatcatgcaaggcatatgcatctgtgtggt 40691330  T
Q  318 gccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||| |||||| ||||||||||||||||||||    
T  40691331 gccttattggcggaaattgcaattatattctgtg 40691364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 217 - 351
Target Start/End: Original strand, 30910154 - 30910287
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg 316  Q
    |||||| ||||  |||||||||| ||||| ||||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||| ||||||||    
T  30910154 gtgcctaagtggcgggttataattatattatgtgtggtgccttagtggcggattt-agtctgcatttccatgatcatgcatggcatatgcatctgtgtgg 30910252  T
Q  317 tgccttagtggcgggaattgcaattatattctgtg 351  Q
    |  |||||| |||||||||||||||||||||||||    
T  30910253 tctcttagtagcgggaattgcaattatattctgtg 30910287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 70 - 316
Target Start/End: Original strand, 42861620 - 42861869
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtggtataatttttt---gtgtagttgcctaa 166  Q
    ||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||| |||  | ||||| || | |||  ||   |||| |||| ||||    
T  42861620 tatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataagatgttgtgttattactttcagtgtggttgtctaa 42861719  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggc 265  Q
    || ||||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||||  |||||| | | || ||||| ||||||||||  |||||    
T  42861720 gtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgcctatgtggc 42861818  T
Q  266 gggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg 316  Q
    ||| || |   | ||||||||||||||||||| ||||||||| ||||||||    
T  42861819 gggattcatgatccattttcatgatcatgcatagcatatgcatctgtgtgg 42861869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 537211 - 537306
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 348  Q
    ||||||||||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  537211 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 537306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 232 - 345
Target Start/End: Original strand, 38001353 - 38001463
Alignment:
Q  232 gttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    |||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||||||||  ||||| |||||||| |||||||||| | ||||||||||    
T  38001353 gttataattatattctgtgtggtgtcttagtggcgggttttaatctgcattttcatgatc--gcatgacatatgcatctgtgtggtgtc-tagtggcggg 38001449  T
Q  332 aattgcaattatat 345  Q
    ||||||||||||||    
T  38001450 aattgcaattatat 38001463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 25101888 - 25101722
Alignment:
Q  104 ttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataacat 203  Q
    |||||||| || |||| |||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||| || ||| ||| |||| | ||    
T  25101888 ttttatgagagttttcatttgtcatgtgcatgatgtggtattattttctgtgtggttgcttaagtggcggggattgcatcta-tttgattatcatgatat 25101790  T
Q  204 atgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggcgggtt 270  Q
    ||||||||||| ||| ||||||||  |||||| | | || |||||  ||| |||||||||||||||||    
T  25101789 atgcatttttgatgtaccttagtggcgggttaaacttataattcttggtgttgccttagtggcgggtt 25101722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 104 - 270
Target Start/End: Complemental strand, 25160981 - 25160815
Alignment:
Q  104 ttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataacat 203  Q
    |||||||| || |||| |||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||||||| || ||| ||| |||| | ||    
T  25160981 ttttatgagagttttcatttgtcatgtgcatgatgtggtattattttctgtgtggttgcttaagtggcggggattgcatcta-tttgattatcatgatat 25160883  T
Q  204 atgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggcgggtt 270  Q
    ||||||||||| ||| ||||||||  |||||| | | || |||||  ||| |||||||||||||||||    
T  25160882 atgcatttttgatgtaccttagtggcgggttaaacttataattcttggtgttgccttagtggcgggtt 25160815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 25101671 - 25101617
Alignment:
Q  277 ttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||    
T  25101671 ttcattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25101617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 25160764 - 25160710
Alignment:
Q  277 ttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    ||||||||||||||||||||||| ||||||| |||||||||||||  ||||||||    
T  25160764 ttcattttcatgatcatgcatggtatatgcatctgtgtggtgcctgtgtggcggg 25160710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 331
Target Start/End: Original strand, 6309115 - 6309237
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtc--------ttcattttcatgatcatgcatggcatatgcac 308  Q
    |||||||||||  ||||||  || ||||||||||||||||||||||||||||||    ||        || ||||||||||||||||||||||||||||     
T  6309115 gtgccttagtggcgggttactattatattctgtgtggtgccttagtggcgggttaatatcatattgcatttattttcatgatcatgcatggcatatgcat 6309214  T
Q  309 ctgtgtggtgccttagtggcggg 331  Q
    |||||||||| ||  ||||||||    
T  6309215 ctgtgtggtgtctgtgtggcggg 6309237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 4557774 - 4557694
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcatt-ttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    |||||| |||||| || ||||||||||||| |||||||||||||| | ||||||||| || ||||||||||  ||||||||    
T  4557774 gtgcctaagtggctggatttagtcttcattgttcatgatcatgcattagcatatgcatctctgtggtgcctgtgtggcggg 4557694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 351
Target Start/End: Original strand, 38001478 - 38001508
Alignment:
Q  321 ttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||||||||||||||||||||||||||    
T  38001478 ttagtggcgggaattgcaattatattctgtg 38001508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 537314 - 537343
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  537314 tgccttagtggcgggaattgcaattatatt 537343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 270
Target Start/End: Original strand, 6309103 - 6309132
Alignment:
Q  241 atattctgtgtggtgccttagtggcgggtt 270  Q
    ||||||||||||||||||||||||||||||    
T  6309103 atattctgtgtggtgccttagtggcgggtt 6309132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 7e-40; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 253 - 348
Target Start/End: Complemental strand, 10751375 - 10751280
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 348  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  10751375 gtgccttagtggcgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattacaattatattct 10751280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 70 - 330
Target Start/End: Complemental strand, 13773384 - 13773121
Alignment:
Q  70 tatcgaacaaaaataataagaagagaaataagttttttatgaaagatttcttttgtcgtgtgcatgatgtgg---tataattttttgtgtagttgcctaa 166  Q
    ||||||||  ||||||||||||||||||| ||  ||||||||||||||||||||||| |||  | ||||| |   ||| | ||| ||||| |||||||||    
T  13773384 tatcgaactgaaataataagaagagaaatgagccttttatgaaagatttcttttgtcatgtataggatgttgagttattactttctgtgtggttgcctaa 13773285  T
Q  167 gttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgccttagtgttgggttataatcat-attctgtgtggtgccttagtggc 265  Q
    || ||||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||||  |||||| | | || ||||| |||||||||| ||||||    
T  13773284 gtggcggg-attgcatctatttttattatcatgacataagcatttttggtgtgccttagtggcgggttaaacttataattctttgtggtgcctaagtggc 13773186  T
Q  266 gggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgg 330  Q
    | | |  |   | ||||||||||||||||||| |||||| || |||||||||||||  |||||||    
T  13773185 gagatccatgatccattttcatgatcatgcatagcatatacatctgtgtggtgcctgtgtggcgg 13773121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 266 - 351
Target Start/End: Complemental strand, 23260416 - 23260331
Alignment:
Q  266 gggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  23260416 gggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattttgtg 23260331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 34636578 - 34636673
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattct 348  Q
    ||||||||||||||||||||||| | |||||||||| || ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  34636578 gtgccttagtggcgggttttagtgtgcattttcatgttcgtgcatggcatatgcatctgtgtggtgccttagtggcgggatttgcaattatattct 34636673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 331
Target Start/End: Complemental strand, 32450033 - 32449954
Alignment:
Q  253 gtgccttagtggcgggttttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcggg 331  Q
    |||||| ||||||||| |||| |||||||||||||||||||||| | ||||||||| |||||||||||||  ||||||||    
T  32450033 gtgcctaagtggcgggatttaatcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcggg 32449954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Complemental strand, 23260326 - 23260297
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  23260326 tgccttagtggcgggaattgcaattatatt 23260297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 346
Target Start/End: Original strand, 34636681 - 34636710
Alignment:
Q  317 tgccttagtggcgggaattgcaattatatt 346  Q
    ||||||||||||||||||||||||||||||    
T  34636681 tgccttagtggcgggaattgcaattatatt 34636710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 326
Target Start/End: Original strand, 24163327 - 24163395
Alignment:
Q  260 agtggcgggttttagtcttca-ttttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtg 326  Q
    ||||||||| ||||||||||| |||||||||| ||||| | ||||||| | |||||||||| |||||||    
T  24163327 agtggcgggatttagtcttcatttttcatgattatgcattagcatatgtatctgtgtggtgtcttagtg 24163395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 26182448 - 26182412
Alignment:
Q  261 gtggcgggttttagtcttcattttcatgatcatgcat 297  Q
    ||||| || ||||||||||||||||||||||||||||    
T  26182448 gtggcaggatttagtcttcattttcatgatcatgcat 26182412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 41958236 - 41958139
Alignment:
Q  254 tgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtggtgccttagtggcgggaattgcaattatattctgtg 351  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41958236 tgccttagtgatgggttttagtctgcattttcatgatcatgcatggcatatgcatctgtgtggtgccttagtggcgggaattgcaattatattctgtg 41958139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 332
Target Start/End: Original strand, 44436477 - 44436592
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggttttagtcttcattttcatgatcatgcatggcatatgcacctgtgtgg 316  Q
    ||||||||||   |||||||||| |||||||||||||||||||||||| ||||||||||||  |||||||||||||||| ||||||||||| ||||||||    
T  44436477 gtgccttagttgcgggttataattatattctgtgtggtgccttagtggtgggttttagtctctattttcatgatcatgcttggcatatgcatctgtgtgg 44436576  T
Q  317 tgccttagtggcggga 332  Q
    |||||  |||||||||    
T  44436577 tgcctgtgtggcggga 44436592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 3189401 - 3189279
Alignment:
Q  104 ttttatgaaagatttcttttgtcgtgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataacat 203  Q
    |||||||| || |||||||||||  ||||||||||| |||| | ||| ||||| ||||||||||| ||||||||||||| || ||| |||||||| ||||    
T  3189401 ttttatgagagttttcttttgtcacgtgcatgatgtagtattactttctgtgtggttgcctaagtggcggggattgcatcta-tttgattctcatgacat 3189303  T
Q  204 atgcatttttggtgtgccttagtg 227  Q
    ||||||||||||||||||||||||    
T  3189302 atgcatttttggtgtgccttagtg 3189279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 22635967 - 22635876
Alignment:
Q  128 tgtgcatgatgtggtataattttttgtgtagttgcctaagttgcggggattgcatatatttttattctcataacatatgcatttttggtgtgc 220  Q
    ||||||||||||||||| | ||| ||||| ||||||||||| ||||||||||||| || ||| |||||||| |||||||||||||||| ||||    
T  22635967 tgtgcatgatgtggtattactttctgtgtggttgcctaagtggcggggattgcatcta-tttgattctcatgacatatgcatttttggagtgc 22635876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 22635774 - 22635730
Alignment:
Q  277 ttcattttcatgatcatgcatggcatatgcacctgtgtggtgcct 321  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  22635774 ttcattttcatgatcatgcatggcatatgcatctgtgtggtgcct 22635730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 264 - 330
Target Start/End: Complemental strand, 40841282 - 40841215
Alignment:
Q  264 gcgggttttagtcttcattttcatgatcatgca-tggcatatgcacctgtgtggtgccttagtggcgg 330  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||| |||||||||||||  |||||||    
T  40841282 gcgggatttagtcttcattttcatgatcatgcattagcatatgcatctgtgtggtgcctgtgtggcgg 40841215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 22816064 - 22816023
Alignment:
Q  280 attttcatgatcatgcatggcatatgcacctgtgtggtgcct 321  Q
    |||||||||||||||||||||||||||| ||||| |||||||    
T  22816064 attttcatgatcatgcatggcatatgcatctgtgcggtgcct 22816023  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 44436441 - 44436494
Alignment:
Q  217 gtgccttagtgttgggttataatcatattctgtgtggtgccttagtggcgggtt 270  Q
    ||||||||||   |||||||||| |||||||||||||||||||||| |||||||    
T  44436441 gtgccttagttgcgggttataattatattctgtgtggtgccttagttgcgggtt 44436494  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 44436418 - 44436458
Alignment:
Q  230 gggttataatcatattctgtgtggtgccttagtggcgggtt 270  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  44436418 gggttataattatattctgtgtggtgccttagttgcgggtt 44436458  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 319
Target Start/End: Complemental strand, 3189181 - 3189139
Alignment:
Q  277 ttcattttcatgatcatgcatggcatatgcacctgtgtggtgc 319  Q
    |||||||||||||||||||||| ||||||||  ||||||||||    
T  3189181 ttcattttcatgatcatgcatgacatatgcatttgtgtggtgc 3189139  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 22816122 - 22816082
Alignment:
Q  230 gggttataatcatattctgtgtggtgccttagtggcgggtt 270  Q
    |||||| ||| ||||| ||||||||||||||||||||||||    
T  22816122 gggttacaattatattatgtgtggtgccttagtggcgggtt 22816082  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 33078 - 33038
Alignment:
Q  281 ttttcatgatcatgcatggcatatgcacctgtgtggtgcct 321  Q
    ||||||| |||||||||| |||||||| |||||||||||||    
T  33078 ttttcattatcatgcatgacatatgcatctgtgtggtgcct 33038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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