View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_78 (Length: 359)
Name: NF1358_low_78
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_78 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 2896516 - 2896836
Alignment:
| Q |
30 |
ataattaatgccaagaagcctttagaaaaacatgccaagcagaagaggattattgaagatgaacatttaatacaacaggccaataatagagttcggtgtt |
129 |
Q |
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| T |
2896516 |
ataattaatgccaagaagcctttagaaaaacatgccaagcagaagaggattattgaagatgaacatttaatacaacaggccaataatagagttcggtgtt |
2896615 |
T |
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| Q |
130 |
tgccaaattatagaacaatactatatatactcaaatatttatttattgtgcatgatggggatatgattgtttatttgaactatgaaaggtattttttaat |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2896616 |
tgccaaattatagaacaatactatatatactcaaatatttatttattgtgcatgatggggataagattgtttatttgaactatgaaaggtattttttaat |
2896715 |
T |
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| Q |
230 |
tatttccttaggt-ctctattttatttatgttgattaatgaaaa-gtctctattatagatttggaatacatcacttatcggtgtatttatcatagaagat |
327 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2896716 |
tatttccttaggtactctattttatttatgttgattaatgaaaaggtctctattatagatttggaatacatcacttatcggtgtatttatcatagaagat |
2896815 |
T |
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| Q |
328 |
cccattaaaagggcctctctg |
348 |
Q |
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||||||||||||||||||||| |
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| T |
2896816 |
cccattaaaagggcctctctg |
2896836 |
T |
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