View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_79 (Length: 357)
Name: NF1358_low_79
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 9352099 - 9352319
Alignment:
| Q |
1 |
tggaggcagacggcagccaatcttgaagagtcaatatttgacagtgaagctgtccctccttctctctctgaaattgcacccattcttcgtgttgctaatg |
100 |
Q |
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| T |
9352099 |
tggaggcagacggcagccaatcttggagggtcaatatttgacagtgaagctgtccctccttctcttgctgaaattgcacccattcttcgtgttgctaatg |
9352198 |
T |
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| Q |
101 |
aagttgaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccgttttcattgttacaatgacagattatagagta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9352199 |
aagttgaaaagactcatcctagagttgcttatttatgtaagtgtttcttcaacttctattctcttccattttcattgttacaatgacagattatagagta |
9352298 |
T |
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| Q |
201 |
actcaccaggtcaacattgaa |
221 |
Q |
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| T |
9352299 |
actcaccaggtcaacattgaa |
9352319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 426789 - 426665
Alignment:
| Q |
19 |
aatcttgaagagtcaatatttgacagtgaagctgtccctccttctctctctgaaattgcacccattcttcgtgttgctaatgaagttgaaaagactcatc |
118 |
Q |
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| T |
426789 |
aatcttggagaatctattttcgacagtgaagttgttccttcttctcttgttgaaattgctcccattcttcgtgttgctaatgaagttgaaaaaactcatc |
426690 |
T |
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| Q |
119 |
ctagagttgcttatttatgtaagtg |
143 |
Q |
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| T |
426689 |
ctagagttgcttatttatgtaagtg |
426665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 650171 - 650245
Alignment:
| Q |
70 |
gaaattgcacccattcttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgt |
144 |
Q |
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| T |
650171 |
gaaattgcacccattctttgtgttgctaatgaagttgaaaagactcatcctaaagttgcttatttatgtaagtgt |
650245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 9352319 - 9352367
Alignment:
| Q |
257 |
attgatgaattactcataggtcatgttatgctatgttttgtttgatgat |
305 |
Q |
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| T |
9352319 |
attgatgaattactcataggtcatgttatgctatgttttgtttggtgat |
9352367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 52596080 - 52596158
Alignment:
| Q |
69 |
tgaaattgcacccattcttcgtgttgctaatgaagttgaaaagactcatcctagagttgcttatttatgtaagtgtttc |
147 |
Q |
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| T |
52596080 |
tgaaattgctcccattcttcgtgttgctaatgaggttgaaaagactcatcctagagttgcttatctctgtaagtatttc |
52596158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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