View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_82 (Length: 345)
Name: NF1358_low_82
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_82 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 7 - 333
Target Start/End: Original strand, 26454661 - 26454985
Alignment:
| Q |
7 |
ggaaatagaccactgttatcaggagcagatcaggcctgatactctttcatttgctagaaggttagnnnnnnnaaacctaaacccttttcattgtaatgtt |
106 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26454661 |
ggaaatagatgactgttatcaggagcagatcaggcctgatactctttcatttgctagaaggttagtttttttaaacctaaacccttttcattgtaatgtt |
26454760 |
T |
|
| Q |
107 |
gtttgcttggattgatgagnnnnnnnnnnnnnnnnnnnngtgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttg |
206 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26454761 |
gtttgcttggattgatgagtttttttttttttttttt--gtgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttg |
26454858 |
T |
|
| Q |
207 |
gagactggttgtggaaagactttgatagccatcatgcttcttcgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttc |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26454859 |
gagactggttgtggaaagactttgatagccatcatgcttcttcgaagctacgcttatcacctccgaaagccttctccttacattgctgtttttttggttc |
26454958 |
T |
|
| Q |
307 |
ccaaagttgttttggtttctcaagtat |
333 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
26454959 |
ccaaagttgttttggtttctcaagtat |
26454985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 153 - 333
Target Start/End: Original strand, 26446627 - 26446807
Alignment:
| Q |
153 |
tatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttcttcgaa |
252 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||| |
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| T |
26446627 |
tatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagattggtcgtggaaagactttgatagccatcatgcttctttgaa |
26446726 |
T |
|
| Q |
253 |
gctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtat |
333 |
Q |
| |
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| T |
26446727 |
gctacgcttatcacctccgaaagccttctccttacattgctattttttttattcccaaagttgttttggtttctcaagtat |
26446807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 146 - 275
Target Start/End: Complemental strand, 26448936 - 26448801
Alignment:
| Q |
146 |
gtgtagctatcaacttgaagcatt------ggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatc |
239 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
26448936 |
gtgtagctatcaacttaaagcattttccatggataaagtgattcgtgaaaatactatagtgtacttggagcctggttgtggagagactttgatagccatc |
26448837 |
T |
|
| Q |
240 |
atgcttcttcgaagctacacttatcacctccgaaag |
275 |
Q |
| |
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||||||||| |||||||| ||||||||||| ||||| |
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| T |
26448836 |
atgcttctttgaagctacgcttatcacctctgaaag |
26448801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 26446485 - 26446598
Alignment:
| Q |
7 |
ggaaatagaccactgttatcaggagcagatcaggcctgatactctttcatttgctagaaggttagnnnnnnnaaacctaaacccttttcattgtaatgtt |
106 |
Q |
| |
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||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||| | ||| |||||| |||||||||||| |||||||| |
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| T |
26446485 |
ggaaatagatgactgttatcaagagcagatcacacctgatactcttccatttgctagaaagatag-ttatttaaacct-aacccttttcatagtaatgtt |
26446582 |
T |
|
| Q |
107 |
gtttgcttggattgat |
122 |
Q |
| |
|
|||||||||||||||| |
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| T |
26446583 |
gtttgcttggattgat |
26446598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Complemental strand, 26448993 - 26448947
Alignment:
| Q |
79 |
aaacctaaacccttttcattgtaatgttgtttgcttggattgatgag |
125 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26448993 |
aaacttaaacccttttcattgtaatgttgtttgcttggattgatgag |
26448947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 333
Target Start/End: Original strand, 29673566 - 29673880
Alignment:
| Q |
18 |
actgttatcaggagcagatcaggcctgatactctttcatttgctagaaggttagnnnnnnnaaacctaaacccttttcattgtaatgttgtttgcttgga |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||| |
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| T |
29673566 |
actgttatcaggagcagatcaagcctgatactcttccatttgctagaaggttagtttttt-aaacctaaaccctttccaatgtaatgttgtttgcttgga |
29673664 |
T |
|
| Q |
118 |
ttgatgagnnnnnnnnnnnnnnnnnnnngtgtagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttg |
217 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| ||||||||||| |
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| T |
29673665 |
ttgatgagttttttgttttgttttgtgcatgtagctaccaacttgaagcattggataaagcaatccgcgaaaatactatagtttacttagagactggttg |
29673764 |
T |
|
| Q |
218 |
tggaaagactttgatagccatcatgcttcttcgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgtt |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29673765 |
tggaaagactttgatagccatcatgcttcttcgaagctacgcttatcacctccgaaagccttctccttacattgctgtttttttggttcccaaagttgtt |
29673864 |
T |
|
| Q |
318 |
ttggtttctcaagtat |
333 |
Q |
| |
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|||||||||||||||| |
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| T |
29673865 |
ttggtttctcaagtat |
29673880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 149 - 333
Target Start/End: Complemental strand, 11495693 - 11495509
Alignment:
| Q |
149 |
tagctatcaacttgaagcattggataaagcgattcgcgaaaatactatagtgtacttggagactggttgtggaaagactttgatagccatcatgcttctt |
248 |
Q |
| |
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||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11495693 |
tagctatcagcttgaagcattggaaaaagcgatccgtgaaaataccatagtgtacttggagactggttctggaaagactttgatagccatcatgcttctt |
11495594 |
T |
|
| Q |
249 |
cgaagctacacttatcacctccgaaagccttctccttacattgctgnnnnnnnggttcccaaagttgttttggtttctcaagtat |
333 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
11495593 |
cgaagctacgcttatcacctccgaaagccttctccttacattgctgtgtttttggttcccaaagttgttttggtttctcaagtat |
11495509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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