View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_83 (Length: 345)
Name: NF1358_low_83
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_83 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 31 - 334
Target Start/End: Complemental strand, 37915264 - 37914961
Alignment:
| Q |
31 |
ggaaggaagatcaagaggcggagagtattcaagagacaactcgttgttgtttgttatagctttggaaacaaatgcccaaaatttcatgaaatgatgaagt |
130 |
Q |
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| T |
37915264 |
ggaaggaagatcaagaggcggagagtattcaagagacaactcgttgttgtttgttatagctttggaaacaaatgcccaaaatttcatgaaatgatgaagt |
37915165 |
T |
|
| Q |
131 |
gattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccatgagaggaacaatacatg |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37915164 |
gattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccatgagaggaacaatacatg |
37915065 |
T |
|
| Q |
231 |
taccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctaa |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37915064 |
taccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctga |
37914965 |
T |
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| Q |
331 |
ggat |
334 |
Q |
| |
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|||| |
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| T |
37914964 |
ggat |
37914961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 32 - 334
Target Start/End: Original strand, 37960965 - 37961270
Alignment:
| Q |
32 |
gaaggaagatcaagaggcggagagtattcaagagacaactcgttgttgtttgtt---atagctttggaaacaaatgcccaaaatttcatgaaatgatgaa |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||| || || ||||| |||| | | ||||||||||||| |||||| |||| |
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| T |
37960965 |
gaaggaagatcaagaggcggagagtattcaagagacaaattattgttgttttttgctatggcttttgaaagagaggcccaaaatttcacgaaatggtgaa |
37961064 |
T |
|
| Q |
129 |
gtgattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccatgagaggaacaataca |
228 |
Q |
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| T |
37961065 |
gtgattttccgtctgcagcaacatggttgtaacttaggcaaatagacaagccggagtttggaagaacggtgacttgaatagccattatagggatgatgcg |
37961164 |
T |
|
| Q |
229 |
tgtaccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgct |
328 |
Q |
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|| | |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
37961165 |
agtgttgtcttgttcggtacgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgct |
37961264 |
T |
|
| Q |
329 |
aaggat |
334 |
Q |
| |
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||||| |
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| T |
37961265 |
gaggat |
37961270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 238 - 334
Target Start/End: Complemental strand, 37906894 - 37906798
Alignment:
| Q |
238 |
ttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctaaggat |
334 |
Q |
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|||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
37906894 |
ttgttcggtacgaggtggaggtaaatttggaacgagatggtgccagttttgagcatcttgtgaatcagatacgaggatgttgaagtctgctgaggat |
37906798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 37907030 - 37906982
Alignment:
| Q |
104 |
gcccaaaatttcatgaaatgatgaagt--gattttccgtctgcaacaac |
150 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| |||| |||| |
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| T |
37907030 |
gcccaaaatttcatgaaatgatgaagtacgattttccgtatgcagcaac |
37906982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 36 - 334
Target Start/End: Complemental strand, 3783368 - 3783067
Alignment:
| Q |
36 |
gaagatcaagaggcggagagtattcaagagacaactcgttgttgtttgttatagctttggaaacaaatgcccaaaatttcatgaaatgatgaagtgattt |
135 |
Q |
| |
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|||||||||||||| |||||| ||| ||||| || ||||||| | ||| | | |||||||||| ||| ||| | ||||||||| || ||||||||||| |
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| T |
3783368 |
gaagatcaagaggcagagagtgttctagagataatctgttgttgatggttttggttttggaaacatatgaccagagtttcatgaattggtgaagtgattt |
3783269 |
T |
|
| Q |
136 |
tccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccatgagaggaacaatacatgtacca |
235 |
Q |
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||| || | ||| ||| ||||||| ||| || |||| ||| |||||||||||||||||||||| |||||||||||| ||||| || | | ||| || |
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| T |
3783268 |
tccatcacctgcaatgtggttaaacgtgaggcagatagcgaatccagagttaggtagaatggtgacttgaatggccattagagggacgacgcgtgtgtca |
3783169 |
T |
|
| Q |
236 |
ttttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgt---gaatcagatatgaggatgttgaagtctgctaagg |
332 |
Q |
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|| ||||||||| |||| | ||| || || |||| || ||||||| |||||| | |||||||| ||||| || || |||| |||||||| |||||||| |
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| T |
3783168 |
ttgtgttcagtatgaggagaaggcaagttcggaaaaaaagggtgcaaatttttaacatcttgtgaagaatctgaaataaggaggttgaagtttgctaagg |
3783069 |
T |
|
| Q |
333 |
at |
334 |
Q |
| |
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|| |
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|
| T |
3783068 |
at |
3783067 |
T |
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