View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_84 (Length: 344)
Name: NF1358_low_84
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 29 - 334
Target Start/End: Complemental strand, 18589967 - 18589662
Alignment:
| Q |
29 |
aattttaaaagtctccaataccggagacgtttatgtttgatcgcagtcgtggacttttatttaaaaccgtacacgaaacttgtagtgtaaagtggttata |
128 |
Q |
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| T |
18589967 |
aattttaaaagtcttcaataccggagacatttatgtttgatcgcagtcgtagacttttatttaaaaccgtacccgaaacttgtagtgtaaagtggttata |
18589868 |
T |
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| Q |
129 |
gtgactaataagagttgttgaacacaggaaggagtattttgagattccatgggcaagtttgagggcaatggtggagccatcctttgcagaaaggacagtg |
228 |
Q |
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| T |
18589867 |
gtgactaataagagttgttgaacacaggaaggagtattttgagattccatgggcaagtttgagggcaatggtggagccatcctttgcagaaaggacagta |
18589768 |
T |
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| Q |
229 |
atcaaccatagagaatatttcacaaaaggtgaccttgttatatcaagtgccatcaacataactgaatctgaagtcttcacggctgatggccgtgaatttg |
328 |
Q |
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| T |
18589767 |
atcaaccatagagaatatttcacaaaaggtgaccttgttatatcaagtgccatcaacataactgaatctgaagtcttcacggctgatggccgtgaatttg |
18589668 |
T |
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| Q |
329 |
cctatg |
334 |
Q |
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|||||| |
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| T |
18589667 |
cctatg |
18589662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 153 - 278
Target Start/End: Complemental strand, 18630368 - 18630243
Alignment:
| Q |
153 |
caggaaggagtattttgagattccatgggcaagtttgagggcaatggtggagccatcctttgcagaaaggacagtgatcaaccatagagaatatttcaca |
252 |
Q |
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||||||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||| | ||||||||| |
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| T |
18630368 |
caggaaggaatattttgagattacatgggcaagtttgaggtcaatggtggaaccatcctttgcagaaaggacattgataaaccatagacagtatttcaca |
18630269 |
T |
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| Q |
253 |
aaaggtgaccttgttatatcaagtgc |
278 |
Q |
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| T |
18630268 |
aaaggtgaccttgttacatccagtgc |
18630243 |
T |
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