View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_85 (Length: 343)

Name: NF1358_low_85
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_85
NF1358_low_85
[»] chr7 (5 HSPs)
chr7 (54-256)||(6849371-6849573)
chr7 (15-258)||(6889731-6889980)
chr7 (13-225)||(6844728-6844943)
chr7 (18-56)||(6849172-6849210)
chr7 (27-243)||(30597478-30597694)
[»] chr5 (2 HSPs)
chr5 (173-224)||(25070005-25070056)
chr5 (173-224)||(25127980-25128031)
[»] chr3 (2 HSPs)
chr3 (187-225)||(481774-481812)
chr3 (192-225)||(476840-476873)
[»] chr6 (3 HSPs)
chr6 (192-233)||(7114797-7114838)
chr6 (192-233)||(7119869-7119910)
chr6 (192-233)||(7123273-7123314)
[»] chr4 (1 HSPs)
chr4 (181-225)||(52187624-52187668)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 54 - 256
Target Start/End: Original strand, 6849371 - 6849573
Alignment:
Q  54 tttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatcaaacatgtaaatattgatctatgtatgg 153  Q
    ||||||||||||||||| |||||||||||| |||| | |||||||||||||||||||||||| |||||| |||||||||||||||||||| ||  |||||    
T  6849371 tttgtctttggttgtacgggggatattcctaatctaaaactacgtgggagagagagcaatctctcttccgtcaaacatgtaaatattgatttaaatatgg 6849470  T
Q  154 ggtgtattaatgaggatactcctttggttcttctcaaatggctggttgaacttgctaatatcaaatcattgataatcaatgaaactgctcaggaggtact 253  Q
    ||| |||| ||| |||||||||||| ||||||||||| ||||||| ||||||| ||||| |||||||||||| ||||||||| ||| |||  ||||||||    
T  6849471 ggtctattgatgcggatactccttttgttcttctcaactggctggctgaacttactaatgtcaaatcattgacaatcaatgatacttctctagaggtact 6849570  T
Q  254 ttc 256  Q
    |||    
T  6849571 ttc 6849573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 6889731 - 6889980
Alignment:
Q  15 tatggcaaaatcgagttatctactccaagtctttgcacctttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||  || | | |||||| ||||| ||||| ||||| |||||||||||    
T  6889731 tatggcaaaatcgagttatctactccaagtctttgcacctttgtctttgtttgtatcggaggttttcctgctctgaaactacatgggatagagagcaatc 6889830  T
Q  115 tatcttccatcaaacatgtaaatattgatctatgtatgg------ggtgtattaatgaggatactcctttggttcttctcaaatggctggttgaacttgc 208  Q
    | |||||  ||||||||||||| |||||| || | || |      ||| |||| |||  |||| | |||||||||||||||| |||||||||||||||||    
T  6889831 tctcttctgtcaaacatgtaaagattgatgtaagcatagcgtcaaggtctattgatgtagatatttctttggttcttctcaactggctggttgaacttgc 6889930  T
Q  209 taatatcaaatcattgataatcaatgaaactgctcaggaggtactttcgt 258  Q
    ||||||||||||||||| ||||||| | | |||||  |||||||||||||    
T  6889931 taatatcaaatcattgacaatcaatcataatgctctagaggtactttcgt 6889980  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 6844728 - 6844943
Alignment:
Q  13 aatatggcaaaatcgagttatctactccaagtctttgcacctttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaa 112  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||   ||| ||||||||| ||||| ||||| ||||| |||||| ||    
T  6844728 aatatgacaaaattgagttatctactccaagtctttgcacctttgtctttgtttgtgaggggaatattcctgctctgaaactacatgggatagagagaaa 6844827  T
Q  113 tctatcttccatcaaacatgtaaatattgatctatgta---tggggtgtattaatgaggatactcctttggttcttctcaaatggctggttgaacttgct 209  Q
    ||| |||||  ||||||||||||| |||||| || | |   | ||| |||||  || ||||||| |||||| ||||||||| |||||||||||||||||     
T  6844828 tctctcttctgtcaaacatgtaaagattgatgtaagcatattagggagtattgttgtggatacttctttggctcttctcaactggctggttgaacttgcc 6844927  T
Q  210 aatatcaaatcattga 225  Q
    ||||||||||||||||    
T  6844928 aatatcaaatcattga 6844943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 6849172 - 6849210
Alignment:
Q  18 ggcaaaatcgagttatctactccaagtctttgcaccttt 56  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6849172 ggcataatcgagttatctactccaagtctttgcaccttt 6849210  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 30597694 - 30597478
Alignment:
Q  27 gagttatctactccaagtctttgcacctttgtctttggttgtacaggggatattcctgatctgagactacgtgggagagagagcaatctatcttccatca 126  Q
    |||||||||||||||||||||| |||||||| ||||| ||||   | || |||||||| | ||| |||| || ||||  | | ||| || |||||  |||    
T  30597694 gagttatctactccaagtcttttcacctttgactttgtttgttatgagggtattcctgttttgaaactatgtaggagcaaaatcaacctctcttctgtca 30597595  T
Q  127 aacatgtaaatattgatctatgtatggggtgtattaatgaggatactcctttggttcttctcaaatggctggttgaacttgctaatatcaaatcattgat 226  Q
    ||||||||||||||||  || | ||| ||     | |||  ||| || | |||||||||||||| ||| | | ||| ||||||||||||||||||||||     
T  30597594 aacatgtaaatattgaggtaagaatgtggacagattatgccgatgcttcgttggttcttctcaactggttagctgagcttgctaatatcaaatcattgac 30597495  T
Q  227 aatcaatgaaactgctc 243  Q
    | ||||| | |||||||    
T  30597494 actcaatcatactgctc 30597478  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 25070005 - 25070056
Alignment:
Q  173 tcctttggttcttctcaaatggctggttgaacttgctaatatcaaatcattg 224  Q
    ||||||| |||| ||||| |||||||||||  ||||||||||||||||||||    
T  25070005 tcctttgcttctactcaactggctggttgagattgctaatatcaaatcattg 25070056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 25127980 - 25128031
Alignment:
Q  173 tcctttggttcttctcaaatggctggttgaacttgctaatatcaaatcattg 224  Q
    ||||||| |||| ||||| |||||||||||  ||||||||||||||||||||    
T  25127980 tcctttgcttctactcaactggctggttgagattgctaatatcaaatcattg 25128031  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 225
Target Start/End: Original strand, 481774 - 481812
Alignment:
Q  187 tcaaatggctggttgaacttgctaatatcaaatcattga 225  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  481774 tcaactggctggttgaacttgctaatatcgaatcattga 481812  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 225
Target Start/End: Original strand, 476840 - 476873
Alignment:
Q  192 tggctggttgaacttgctaatatcaaatcattga 225  Q
    |||||||||||||||||||||||| |||||||||    
T  476840 tggctggttgaacttgctaatatcgaatcattga 476873  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 7114838 - 7114797
Alignment:
Q  192 tggctggttgaacttgctaatatcaaatcattgataatcaat 233  Q
    ||||||||||| |||||||||||| ||||||||| |||||||    
T  7114838 tggctggttgagcttgctaatatcgaatcattgacaatcaat 7114797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 7119910 - 7119869
Alignment:
Q  192 tggctggttgaacttgctaatatcaaatcattgataatcaat 233  Q
    ||||||||||| |||||||||||| ||||||||| |||||||    
T  7119910 tggctggttgagcttgctaatatcgaatcattgacaatcaat 7119869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 7123314 - 7123273
Alignment:
Q  192 tggctggttgaacttgctaatatcaaatcattgataatcaat 233  Q
    ||||||||||| |||||||||||| ||||||||| |||||||    
T  7123314 tggctggttgagcttgctaatatcgaatcattgacaatcaat 7123273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 52187624 - 52187668
Alignment:
Q  181 ttcttctcaaatggctggttgaacttgctaatatcaaatcattga 225  Q
    |||| ||||| ||||||||||| |||||||||||| |||||||||    
T  52187624 ttctactcaattggctggttgagcttgctaatatcgaatcattga 52187668  T

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