View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1358_low_86 (Length: 342)
Name: NF1358_low_86
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 97 - 326
Target Start/End: Complemental strand, 1455049 - 1454820
Alignment:
| Q |
97 |
gtaagcacgacgctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatg |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1455049 |
gtaagcacgacgctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatg |
1454950 |
T |
|
| Q |
197 |
cacagccatgccgatcatttccacttctgtctgaaattgcagctccccaccctgttccccaccacgtgtgcgttcctctctgagtctttttactgctaca |
296 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1454949 |
cacagccatgccgatcatttcaacttctgtctgaaattgcagctccccaccctgttccccaccacgtgtgcgttcctctctgagtctttttactgctaca |
1454850 |
T |
|
| Q |
297 |
agagtgccatcagctaagcgtcctttataa |
326 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
1454849 |
agagtgccatcagctaagcgtcctttataa |
1454820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 97 - 325
Target Start/End: Complemental strand, 1448315 - 1448099
Alignment:
| Q |
97 |
gtaagcacgacgctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatg |
196 |
Q |
| |
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|||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
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| T |
1448315 |
gtaaacacgatgctacacttccattagccattaaaggatacacaagcaaacgttcagtagatgttacgcaaaaaccacgaagacgaagcaaattacgatg |
1448216 |
T |
|
| Q |
197 |
cacagccatgccgatcatttccacttctgtctgaaattgcagctccccaccctgttccccaccacgtgtgcgttcctctctgagtctttttactgctaca |
296 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| |||| || ||||||||| | |||||||||||||||||| |
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| T |
1448215 |
cacagccatgccgatcatttctacttctgtctgaaattgcagctccccgccct------------ttgaacgttcctctttaagtctttttactgctaca |
1448128 |
T |
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| Q |
297 |
agagtgccatcagctaagcgtcctttata |
325 |
Q |
| |
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||||| ||||||||||||||||||||||| |
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| T |
1448127 |
agagttccatcagctaagcgtcctttata |
1448099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 108 - 322
Target Start/End: Complemental strand, 1440894 - 1440692
Alignment:
| Q |
108 |
gctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatgcacagccatgc |
207 |
Q |
| |
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|||| |||||||||| |||||||||||||||| ||||||||||| || ||||||| |||||||||||||| | |||||||||||||||||||||||||| |
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| T |
1440894 |
gctacacttccattaaccattaaaggatacacgagcaaacgttcggtggatgtcatgcaaaaaccacgaagccgaagcaaattacgatgcacagccatgc |
1440795 |
T |
|
| Q |
208 |
cgatcatttccacttctgtctgaaattgcagctccccaccctgttccccaccacgtgtgcgttcctctctgagtctttttactgctacaagagtgccatc |
307 |
Q |
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||| ||||||||||||||||| ||||||||||||||||| | ||| |||||||||| | ||||||||||||||||||||||| || || |
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| T |
1440794 |
tgattatttccacttctgtctggaattgcagctccccacctt------------gtgcgcgttcctctttaagtctttttactgctacaagagtaccgtc |
1440707 |
T |
|
| Q |
308 |
agctaagcgtccttt |
322 |
Q |
| |
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||||||||||||||| |
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| T |
1440706 |
agctaagcgtccttt |
1440692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 108 - 326
Target Start/End: Complemental strand, 1428945 - 1428739
Alignment:
| Q |
108 |
gctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatgcacagccatgc |
207 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||| | |
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| T |
1428945 |
gctacacttccattggccatgtaaggatacacaagcaaacgttcagtagatgtcatgcaaaatccacgaagccgaagcaaattacgatgcacagccatac |
1428846 |
T |
|
| Q |
208 |
cgatcatttccacttctgtctgaaattgcagctccccaccctgttccccaccacgtgtgcgttcctctctgagtctttttactgctacaagagtgccatc |
307 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| | |||| ||||||||| | ||||| ||||| |||||||| |||| ||| |
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| T |
1428845 |
tgatcatttccacttctgtttgaaattgcagctccccacctt------------gtgtacgttcctctttaagtctctttacagctacaagtgtgctatc |
1428758 |
T |
|
| Q |
308 |
agctaagcgtcctttataa |
326 |
Q |
| |
|
||| ||||||||||||||| |
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| T |
1428757 |
agccaagcgtcctttataa |
1428739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 1435554 - 1435427
Alignment:
| Q |
113 |
acttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatgcacagccatgccgatc |
212 |
Q |
| |
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||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||||||| |||| |
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| T |
1435554 |
acttccattagccatgtaaggatacacaagcaagcgttcagtaggtgtcatgcaaaaatcacgaaggcgaagcaaattatgatgcacagccatgctgatc |
1435455 |
T |
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| Q |
213 |
atttccacttctgtctgaaattgcagct |
240 |
Q |
| |
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| ||| ||||| || ||||| ||||||| |
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| T |
1435454 |
aattcaacttcagtttgaaactgcagct |
1435427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 43826928 - 43826981
Alignment:
| Q |
194 |
atgcacagccatgccgatcatttccacttctgtctgaaattgcagctccccacc |
247 |
Q |
| |
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|||||||||||||| |||||| || ||||| |||||||| || ||||||||||| |
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| T |
43826928 |
atgcacagccatgctgatcatctctacttcagtctgaaactgaagctccccacc |
43826981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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