View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1358_low_9 (Length: 665)

Name: NF1358_low_9
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1358_low_9
NF1358_low_9
[»] chr2 (10 HSPs)
chr2 (183-591)||(15360728-15361133)
chr2 (441-572)||(2063137-2063269)
chr2 (420-533)||(15126130-15126244)
chr2 (444-572)||(40470651-40470780)
chr2 (479-572)||(25504579-25504670)
chr2 (94-145)||(15360640-15360688)
chr2 (443-475)||(13699066-13699098)
chr2 (443-475)||(25504689-25504721)
chr2 (443-478)||(7696248-7696283)
chr2 (443-478)||(24308513-24308548)
[»] chr5 (11 HSPs)
chr5 (419-571)||(27713311-27713462)
chr5 (422-541)||(22675034-22675154)
chr5 (457-558)||(4941346-4941446)
chr5 (443-576)||(24071948-24072080)
chr5 (479-572)||(8731237-8731328)
chr5 (443-475)||(8731186-8731218)
chr5 (533-592)||(25992352-25992411)
chr5 (517-592)||(33258560-33258634)
chr5 (443-477)||(7682840-7682874)
chr5 (443-479)||(14302202-14302238)
chr5 (443-479)||(30097619-30097655)
[»] chr4 (7 HSPs)
chr4 (441-584)||(28967134-28967277)
chr4 (440-506)||(12296442-12296508)
chr4 (430-506)||(46487528-46487604)
chr4 (511-570)||(38930118-38930177)
chr4 (442-506)||(27314451-27314515)
chr4 (443-478)||(43373866-43373901)
chr4 (546-592)||(22810844-22810889)
[»] chr6 (5 HSPs)
chr6 (419-526)||(13098299-13098406)
chr6 (420-494)||(16180659-16180732)
chr6 (479-584)||(16180535-16180642)
chr6 (443-478)||(32935102-32935137)
chr6 (444-478)||(17278261-17278295)
[»] scaffold0499 (1 HSPs)
scaffold0499 (419-526)||(6804-6911)
[»] chr7 (8 HSPs)
chr7 (438-541)||(25438412-25438517)
chr7 (419-526)||(48058394-48058503)
chr7 (443-506)||(9107413-9107475)
chr7 (443-478)||(28534288-28534323)
chr7 (443-478)||(23983491-23983526)
chr7 (498-572)||(25438673-25438748)
chr7 (529-592)||(48058343-48058406)
chr7 (419-457)||(47456819-47456857)
[»] chr1 (6 HSPs)
chr1 (419-562)||(19598882-19599031)
chr1 (443-506)||(16577546-16577608)
chr1 (443-478)||(37200388-37200423)
chr1 (520-571)||(50588964-50589015)
chr1 (530-576)||(17033942-17033988)
chr1 (443-476)||(38548838-38548871)
[»] chr8 (3 HSPs)
chr8 (517-570)||(8862314-8862367)
chr8 (444-478)||(25184919-25184953)
chr8 (443-478)||(30235891-30235926)
[»] chr3 (6 HSPs)
chr3 (457-572)||(47945974-47946090)
chr3 (443-478)||(1652650-1652685)
chr3 (443-474)||(12086528-12086559)
chr3 (419-478)||(25594308-25594366)
chr3 (443-478)||(27399231-27399266)
chr3 (442-490)||(40689505-40689552)
[»] scaffold1384 (1 HSPs)
scaffold1384 (517-567)||(1347-1397)
[»] scaffold0063 (1 HSPs)
scaffold0063 (547-591)||(58493-58537)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-175; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 183 - 591
Target Start/End: Original strand, 15360728 - 15361133
Alignment:
Q  183 ctcgttttctccagagcattttatgagtttgaattacacaatgagtttgaagaacactaacgtagctggaaaaattactgataataggtactaacattgt 282  Q
    |||||||||| |  |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||    
T  15360728 ctcgttttcttccaagcaatttatgagtttgaatcacacaatgagtttgaagaacactaacgtagctggaaaaattactgataataggta---acattgt 15360824  T
Q  283 acaggttttatggagtagatgaccatttagtnnnnnnnnnnnnncttagaagattaatgtagtgcatacatctaacataaatgatcacataatataattt 382  Q
    |||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  15360825 acaggttttatggagtagatgaccatttagtaaaaaacaaaaaacttagaagattaatttagtgcatacatctaacataaatgatcacatagtataattt 15360924  T
Q  383 gcctaaaaattaggtaaagcactctaaatgcatgtttggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggt 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15360925 gcctaaaaattaggtaaagcactctaaatgcatgtttggtggtttcgtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggt 15361024  T
Q  483 agggtttgactaggtgttttgtgtgtaagggttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttca 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||    
T  15361025 agggtttgactaggtgttttgtgtgtaagggttgttatggtgtttattttttgggtgtttcgtctatatacggcgcctttcgtttgtattatctgtttca 15361124  T
Q  583 ccagtctct 591  Q
    |||||||||    
T  15361125 ccagtctct 15361133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 441 - 572
Target Start/End: Original strand, 2063137 - 2063269
Alignment:
Q  441 gtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggt---tgttatggtgtttatttttcggg 537  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||| || |   | |||||||||||||||||||||    
T  2063137 gtttttaggtggtgatgtttattttggcgggtgttgtcaggtagggtttgactaggtg--ttgtgtgtagggatgtcttttatggtgtttatttttcggg 2063234  T
Q  538 tgtttcgtttatatacggcgcctttcgtttgtatt 572  Q
    |||||||  |||||||||| |||||||||||||||    
T  2063235 tgtttcgcctatatacggcacctttcgtttgtatt 2063269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 420 - 533
Target Start/End: Complemental strand, 15126244 - 15126130
Alignment:
Q  420 ggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggtt-gtt 518  Q
    |||||||| ||||| | || ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||  ||    
T  15126244 ggtggtttcgtgaacgagtttgtttttaggtggtgatgtttattttggtgggtattgtcaggtaggatttgactaggtgttttgtgtgtaagggttcttt 15126145  T
Q  519 atggtgtttattttt 533  Q
    |||| ||||||||||    
T  15126144 atggggtttattttt 15126130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 444 - 572
Target Start/End: Original strand, 40470651 - 40470780
Alignment:
Q  444 tttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtgttt 542  Q
    ||||||||||||||||||||||||||  ||||||||||| || ||| |||||||||||| |||||||||| || ||||| | ||| |||||  ||||||     
T  40470651 tttaggtggtgatgtttattttggtgactgttgtcaggttggatttaactaggtgttttatgtgtaagggttttttatgttttttttttttaaggtgttc 40470750  T
Q  543 cgtttatatacggcgcctttcgtttgtatt 572  Q
    ||  ||||||| | | ||||||||||||||    
T  40470751 cgcatatatacagtgtctttcgtttgtatt 40470780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 479 - 572
Target Start/End: Complemental strand, 25504670 - 25504579
Alignment:
Q  479 aggtagggtttgactaggtgttttgtgtgtaagggttgttat-ggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 572  Q
    |||| |||||||||||||||||  ||||||| ||| | || | ||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  25504670 aggtggggtttgactaggtgtt--gtgtgtagggggtctttttggtgtttattttt-gggtgtttcgtctatatacggcgccttttgtttgtatt 25504579  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 15360640 - 15360688
Alignment:
Q  94 gaaccaagattgcacctatgatttattattcttctctaatttggtttccaac 145  Q
    ||||||||||||||||||||||   ||||||||||||||||||| |||||||    
T  15360640 gaaccaagattgcacctatgat---ttattcttctctaatttgggttccaac 15360688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 475
Target Start/End: Complemental strand, 13699098 - 13699066
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgtt 475  Q
    |||||||||||||||||||||||||||||||||    
T  13699098 ttttaggtggtgatgtttattttggtgggtgtt 13699066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 475
Target Start/End: Complemental strand, 25504721 - 25504689
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgtt 475  Q
    |||||||||||||||||||||||||||||||||    
T  25504721 ttttaggtggtgatgtttattttggtgggtgtt 25504689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Original strand, 7696248 - 7696283
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    |||||||||||||||| |||||||||||||||||||    
T  7696248 ttttaggtggtgatgtgtattttggtgggtgttgtc 7696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 24308548 - 24308513
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    ||||||||| ||||||||||||||||||||||||||    
T  24308548 ttttaggtgatgatgtttattttggtgggtgttgtc 24308513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 6e-45; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 419 - 571
Target Start/End: Original strand, 27713311 - 27713462
Alignment:
Q  419 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 518  Q
    ||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |  || ||    
T  27713311 tggtggtttcgtgaaggggtttgtttttaggcggtgatgtttattttggggggtgttgtcaggtagggtttgactaggtg-tttgtgtgtaggatttttt 27713409  T
Q  519 atggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtat 571  Q
    |||| |||||||||||||||||| ||  |||||| ||||||||||||||||||    
T  27713410 atggagtttatttttcgggtgttccgcctatatatggcgcctttcgtttgtat 27713462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 422 - 541
Target Start/End: Complemental strand, 22675154 - 22675034
Alignment:
Q  422 tggtttggtgaagggg-tatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgtta 519  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||| ||| || |||    
T  22675154 tggttttgtgaagggggtctgtttttaggtggtgatgtttattttggtgggtg-tgtcaggtatggtttgactaggagttttgtgtgtaggggtttttta 22675056  T
Q  520 tggtgtttatttttcgggtgtt 541  Q
    ||||| |||||||| |||||||    
T  22675055 tggtgattattttttgggtgtt 22675034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 457 - 558
Target Start/End: Complemental strand, 4941446 - 4941346
Alignment:
Q  457 gtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgttatggtgtttatttttcgggtgtttcgtttatatacggc 556  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||| |  || |||||||||||||||||| |||||| ||| ||||||||||    
T  4941446 gtttattttggtgggtgt-gtcaggtagggtttgattaggtgttttgtgtgtaggattttttatggtgtttatttttcaggtgttccgtctatatacggc 4941348  T
Q  557 gc 558  Q
    ||    
T  4941347 gc 4941346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 443 - 576
Target Start/End: Complemental strand, 24072080 - 24071948
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggt-tgttatggtgtttatttttcgggtgtt 541  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||  ||||  | | || | ||||| |||||| ||||||||||||    
T  24072080 ttttatgtggtgatgtttattttggtgggtgttg-aaggtagggtttgactaggtgttacgtgtagaggtgtcttttatgatgttta-ttttcgggtgtt 24071983  T
Q  542 tcgtttatatacggcgcctttcgtttgtattatct 576  Q
     ||  ||||||||||||| || |||||||||||||    
T  24071982 ccgcctatatacggcgcccttagtttgtattatct 24071948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 479 - 572
Target Start/End: Original strand, 8731237 - 8731328
Alignment:
Q  479 aggtagggtttgactaggtgttttgtgtgtaagggttgttat-ggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 572  Q
    |||| |||||||||||||||||  ||||||| ||| | || | ||||||||||||| ||||||||||| |||||||||||||||| |||||||||    
T  8731237 aggtggggtttgactaggtgtt--gtgtgtagggggtctttttggtgtttattttt-gggtgtttcgtctatatacggcgccttttgtttgtatt 8731328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 443 - 475
Target Start/End: Original strand, 8731186 - 8731218
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgtt 475  Q
    |||||||||||||||||||||||||||||||||    
T  8731186 ttttaggtggtgatgtttattttggtgggtgtt 8731218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 533 - 592
Target Start/End: Original strand, 25992352 - 25992411
Alignment:
Q  533 tcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 592  Q
    ||||||||| ||  |||||||||||||||| ||||||||||||  ||||||| |||||||    
T  25992352 tcgggtgttccgcatatatacggcgccttttgtttgtattatcattttcaccggtctctg 25992411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 517 - 592
Target Start/End: Complemental strand, 33258634 - 33258560
Alignment:
Q  517 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 592  Q
    |||||||||||||||| ||||||||||   ||||||||||||||||  ||||||||  | |||||||| |||||||    
T  33258634 ttatggtgtttatttt-cgggtgtttcacatatatacggcgccttttatttgtatttccaatttcaccggtctctg 33258560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 443 - 477
Target Start/End: Original strand, 7682840 - 7682874
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgt 477  Q
    |||||||||||||||| ||||||||||||||||||    
T  7682840 ttttaggtggtgatgtgtattttggtgggtgttgt 7682874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 479
Target Start/End: Complemental strand, 14302238 - 14302202
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtca 479  Q
    ||||||||||||| || ||||||||||||||||||||    
T  14302238 ttttaggtggtgacgtgtattttggtgggtgttgtca 14302202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 443 - 479
Target Start/End: Original strand, 30097619 - 30097655
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtca 479  Q
    ||||||||||||| || ||||||||||||||||||||    
T  30097619 ttttaggtggtgacgtgtattttggtgggtgttgtca 30097655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 441 - 584
Target Start/End: Original strand, 28967134 - 28967277
Alignment:
Q  441 gtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtg 539  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||| ||||| ||||    
T  28967134 gtttttaggtggcgatgtttattttggtgggtgttgtcaggtagggtttgacttggtgttttgtgtgtaagggttttttagggtgttta-ttttcaggtg 28967232  T
Q  540 tttcgtttatatacggcgcctttcgtttgtattatctatttcacc 584  Q
    || ||  ||||||| |||||||||||||||||||||| |||||||    
T  28967233 ttccgcctatatacagcgcctttcgtttgtattatctgtttcacc 28967277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 440 - 506
Target Start/End: Original strand, 12296442 - 12296508
Alignment:
Q  440 tgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  12296442 tgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttggctaggtgttgtgtgt 12296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 430 - 506
Target Start/End: Original strand, 46487528 - 46487604
Alignment:
Q  430 tgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 506  Q
    |||||| || |||||||||| |||||||||||||||||||||| |||| | |||||||||| ||||||||| |||||    
T  46487528 tgaaggagtctgtttttaggaggtgatgtttattttggtgggtattgttaagtagggtttgtctaggtgttgtgtgt 46487604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 511 - 570
Target Start/End: Original strand, 38930118 - 38930177
Alignment:
Q  511 gggttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgta 570  Q
    ||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||    
T  38930118 gggtttttatggtgtttatttttcgggtgttccacctatatacggctcctttcgtttgta 38930177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 442 - 506
Target Start/End: Complemental strand, 27314515 - 27314451
Alignment:
Q  442 tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 506  Q
    |||||||||  ||||||||||||| || ||||||||| ||||||||||||| || |||| |||||    
T  27314515 tttttaggtactgatgtttattttagtaggtgttgtctggtagggtttgaccagatgttgtgtgt 27314451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 43373901 - 43373866
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    ||||||| ||||||||||||||||||||||||||||    
T  43373901 ttttagggggtgatgtttattttggtgggtgttgtc 43373866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 592
Target Start/End: Complemental strand, 22810889 - 22810844
Alignment:
Q  546 ttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 592  Q
    ||||||||||||||||| ||||||||| || ||||||||||||||||    
T  22810889 ttatatacggcgccttt-gtttgtattctcaatttcaccagtctctg 22810844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 419 - 526
Target Start/End: Complemental strand, 13098406 - 13098299
Alignment:
Q  419 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 518  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||    
T  13098406 tggtggttttgtgaaggggtctgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtatgagttttt 13098307  T
Q  519 atggtgtt 526  Q
    ||||||||    
T  13098306 atggtgtt 13098299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 420 - 494
Target Start/End: Complemental strand, 16180732 - 16180659
Alignment:
Q  420 ggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgacta 494  Q
    ||||||||  ||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  16180732 ggtggtttcttgaaggggtctgtttt-aggtggtgatgtttattttggtggatgttgtcaggtagggtttgacta 16180659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 479 - 584
Target Start/End: Complemental strand, 16180642 - 16180535
Alignment:
Q  479 aggtagggtttgactaggtgttttgtgtgtaagggttgtt-atggtgtttatttttcg-ggtgtttcgtttatatacggcgcctttcgtttgtattatct 576  Q
    ||||||||||||||||| ||||||||||| | | ||| || |||||||||||||||   |||||| || |||||||||| | ||||| ||||||||||||    
T  16180642 aggtagggtttgactagttgttttgtgtgaaggagttttttatggtgtttattttttttggtgttccgcttatatacggtgtctttcatttgtattatct 16180543  T
Q  577 atttcacc 584  Q
     |||||||    
T  16180542 gtttcacc 16180535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 32935137 - 32935102
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    |||||||||||| |||||||||||||||||||||||    
T  32935137 ttttaggtggtggtgtttattttggtgggtgttgtc 32935102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 17278295 - 17278261
Alignment:
Q  444 tttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    |||||||||| ||||||||||||||||||||||||    
T  17278295 tttaggtggtaatgtttattttggtgggtgttgtc 17278261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 419 - 526
Target Start/End: Original strand, 6804 - 6911
Alignment:
Q  419 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttgtt 518  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || || |     
T  6804 tggtggttttgtgaaggggtctgtttttaggtggtgatgtttattttggtgggtgttgtcaggttgggtttgactaggtgttttgtgtgtatggatttta 6903  T
Q  519 atggtgtt 526  Q
    ||||||||    
T  6904 atggtgtt 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 438 - 541
Target Start/End: Original strand, 25438412 - 25438517
Alignment:
Q  438 tatgtttttaggtggtgatgtttattttggtggg-tgttgtcaggtagggtttgactaggtgttttgtgtgtaaggg-ttgttatggtgtttatttttcg 535  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| ||||||    
T  25438412 tatgtttttaggaggtgatgtttattttgggggggtgttgtcaggtagggtttgactaggtgttttgtgtgtaggggctttttatgatgtttacttttcg 25438511  T
Q  536 ggtgtt 541  Q
    ||||||    
T  25438512 ggtgtt 25438517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 419 - 526
Target Start/End: Complemental strand, 48058503 - 48058394
Alignment:
Q  419 tggtggtttggtgaaggggtatgttttt--aggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggttg 516  Q
    ||||||||| | |||||||| |||||||  |||||||||||||||||||||||||||||||||||||||  | |||| |||||| | |||||| || ||     
T  48058503 tggtggtttcgagaaggggtctgtttttttaggtggtgatgtttattttggtgggtgttgtcaggtaggactcgactgggtgttctatgtgtagggtttt 48058404  T
Q  517 ttatggtgtt 526  Q
    ||| ||||||    
T  48058403 ttagggtgtt 48058394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 9107413 - 9107475
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 506  Q
    ||||||||||||||| ||||||||||||||||||  |||||| ||||| ||||||||| |||||    
T  9107413 ttttaggtggtgatgcttattttggtgggtgttg-aaggtagagtttggctaggtgttgtgtgt 9107475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 28534323 - 28534288
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    ||||||||||||||||||||||||||||||||||||    
T  28534323 ttttaggtggtgatgtttattttggtgggtgttgtc 28534288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Original strand, 23983491 - 23983526
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    |||||||||||| |||||||||||||||||||||||    
T  23983491 ttttaggtggtggtgtttattttggtgggtgttgtc 23983526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 572
Target Start/End: Original strand, 25438673 - 25438748
Alignment:
Q  498 gttttgtgtgtaaggg-ttgttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtatt 572  Q
    |||||||||||| ||| || |||||||||||| |||||||||||| ||  ||||||||| || | |||||||||||    
T  25438673 gttttgtgtgtaggggctttttatggtgtttacttttcgggtgttccgcctatatacggggcatatcgtttgtatt 25438748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 592
Target Start/End: Complemental strand, 48058406 - 48058343
Alignment:
Q  529 tttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatctatttcaccagtctctg 592  Q
    ||||| ||||||| ||  |||||| | ||||||||||||||||| ||||||||||| |||||||    
T  48058406 tttttagggtgttccgcctatatatgacgcctttcgtttgtattctctatttcaccggtctctg 48058343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 419 - 457
Target Start/End: Complemental strand, 47456857 - 47456819
Alignment:
Q  419 tggtggtttggtgaaggggtatgtttttaggtggtgatg 457  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  47456857 tggtggtttcgtgaaggggtctgtttttaggtggtgatg 47456819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 419 - 562
Target Start/End: Original strand, 19598882 - 19599031
Alignment:
Q  419 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgac----taggtgttttgtgtg--taagg 512  Q
    ||||||||| |||||||  | | |||||||||||||||||| |||||| |||| ||||||||||||||||||||    |||||||||||||||  | |||    
T  19598882 tggtggtttcgtgaaggaatctatttttaggtggtgatgttcattttgatgggggttgtcaggtagggtttgaccatgtaggtgttttgtgtgcatgagg 19598981  T
Q  513 gttgttatggtgtttatttttcgggtgtttcgtttatatacggcgccttt 562  Q
     || | |||||||||| ||||| |||||| ||  ||||||||||||||||    
T  19598982 tttttcatggtgtttacttttcaggtgttccgcctatatacggcgccttt 19599031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 506
Target Start/End: Original strand, 16577546 - 16577608
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgt 506  Q
    ||||||||| ||||||||||||||||||||||||  | ||||||| ||||||| |||| |||||    
T  16577546 ttttaggtgatgatgtttattttggtgggtgttg-aaagtagggtatgactagatgttgtgtgt 16577608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Original strand, 37200388 - 37200423
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    ||||||||||||||||||||||| ||||||||||||    
T  37200388 ttttaggtggtgatgtttattttagtgggtgttgtc 37200423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 50589015 - 50588964
Alignment:
Q  520 tggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgtat 571  Q
    ||||||||||| ||| |||||| ||  |||||||||||||||||||||||||    
T  50589015 tggtgtttattcttcaggtgttccgcctatatacggcgcctttcgtttgtat 50588964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 530 - 576
Target Start/End: Original strand, 17033942 - 17033988
Alignment:
Q  530 ttttcgggtgtttcgtttatatacggcgcctttcgtttgtattatct 576  Q
    |||||||||||| || ||||||||| ||||||| |||||||||||||    
T  17033942 ttttcgggtgttccgcttatatacgacgccttttgtttgtattatct 17033988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 476
Target Start/End: Complemental strand, 38548871 - 38548838
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttg 476  Q
    |||||||||||||||||||||||||||| |||||    
T  38548871 ttttaggtggtgatgtttattttggtggatgttg 38548838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 570
Target Start/End: Complemental strand, 8862367 - 8862314
Alignment:
Q  517 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgtttgta 570  Q
    |||||||||||||||||||| |||| ||| |||||||||||||||| |||||||    
T  8862367 ttatggtgtttatttttcggatgttccgtctatatacggcgccttttgtttgta 8862314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 444 - 478
Target Start/End: Complemental strand, 25184953 - 25184919
Alignment:
Q  444 tttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    |||||||||||||||||||||||||||||||||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtc 25184919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 30235926 - 30235891
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30235926 ttttagggggtgatgtttattttggtgggtgttgtc 30235891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 572
Target Start/End: Original strand, 47945974 - 47946090
Alignment:
Q  457 gtttattttggtgggtgttgtcaggtagggtttgactaggtgttttgtgtgtaagggtt---gttatggtgtttatttttcgggtgtttcgtttatatac 553  Q
    ||||||||||||||||| |||||  || ||||||| ||||| ||||||||||| || ||    ||||||| |||||||||| |||||| ||  |||||||    
T  47945974 gtttattttggtgggtg-tgtcatataaggtttgattaggtattttgtgtgtagggtttttctttatggtatttatttttcaggtgttccgcctatatac 47946072  T
Q  554 ggcgcctttcgtttgtatt 572  Q
    | |||| ||||||||||||    
T  47946073 gacgcc-ttcgtttgtatt 47946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Complemental strand, 1652685 - 1652650
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1652685 ttttagggggtgatgtttattttggtgggtgttgtc 1652650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 474
Target Start/End: Original strand, 12086528 - 12086559
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgt 474  Q
    ||||||||||||||||||||||||||||||||    
T  12086528 ttttaggtggtgatgtttattttggtgggtgt 12086559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 419 - 478
Target Start/End: Complemental strand, 25594366 - 25594308
Alignment:
Q  419 tggtggtttggtgaaggggtatgtttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    |||| |||| ||||||| ||||||||| |||| |||||||||||| ||||||||||||||    
T  25594366 tggtcgttttgtgaaggagtatgtttt-aggtagtgatgtttattgtggtgggtgttgtc 25594308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 478
Target Start/End: Original strand, 27399231 - 27399266
Alignment:
Q  443 ttttaggtggtgatgtttattttggtgggtgttgtc 478  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27399231 ttttaggtgatgatgtttattttggtgggtgttgtc 27399266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 442 - 490
Target Start/End: Complemental strand, 40689552 - 40689505
Alignment:
Q  442 tttttaggtggtgatgtttattttggtgggtgttgtcaggtagggtttg 490  Q
    |||||| ||||||||||||||||| ||||||||||  ||||||||||||    
T  40689552 tttttaagtggtgatgtttatttttgtgggtgttg-aaggtagggtttg 40689505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 517 - 567
Target Start/End: Complemental strand, 1397 - 1347
Alignment:
Q  517 ttatggtgtttatttttcgggtgtttcgtttatatacggcgcctttcgttt 567  Q
    |||||||||||||||||||||||||  |  |||||||||||||||| ||||    
T  1397 ttatggtgtttatttttcgggtgttctgcctatatacggcgccttttgttt 1347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 591
Target Start/End: Original strand, 58493 - 58537
Alignment:
Q  547 tatatacggcgcctttcgtttgtattatctatttcaccagtctct 591  Q
    |||||||||||||||| |||| |||||||| ||||||| ||||||    
T  58493 tatatacggcgccttttgtttctattatctgtttcaccggtctct 58537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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