View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1358_low_93 (Length: 331)
Name: NF1358_low_93
Description: NF1358
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1358_low_93 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 20633227 - 20632913
Alignment:
| Q |
1 |
agatttaatgtaacttccggtccgaaattcattcgccttcatttctacccttattcttatttggacttcaacatctcaaaagctttcttatctgtcactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633227 |
agatttaatgtaacttccggtccgaaattcattcgccttcatttctaccctttttcttatttggacttcaacatctcaaaagctttcttatctgtcactg |
20633128 |
T |
|
| Q |
101 |
ctggtaacttcactcttctgcataactttagtgtttctctaaatgtagattactttaacatagcatatttaatgaaagaattcattgtgcatgtaaaagg |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633127 |
ccggtaacttcactcttctgcataactttagtgtttctctaaatgtagattactttaacttagcatatttaatgaaagaattcattgtgcatgtaaaagg |
20633028 |
T |
|
| Q |
201 |
aaatagtttggaacttactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633027 |
aaatagtttggaacttactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatac |
20632928 |
T |
|
| Q |
301 |
attggtggtgatgat |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20632927 |
attggtggtgatgat |
20632913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 20649326 - 20649012
Alignment:
| Q |
1 |
agatttaatgtaacttccggtccgaaattcattcgccttcatttctacccttattcttatttggacttcaacatctcaaaagctttcttatctgtcactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||||| |
|
|
| T |
20649326 |
agatttaatgtaacttccggtccgaaattcattcgccttcatttctaccctttttcttatttgaatttcaatatctcaaaagctttcttatctgtcactg |
20649227 |
T |
|
| Q |
101 |
ctggtaacttcactcttctgcataactttagtgtttctctaaatgtagattactttaacatagcatatttaatgaaagaattcattgtgcatgtaaaagg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20649226 |
ctggtaacttcactcttctgcataactttagtgtttctctaaatgtagattactttaacttagcatatttaatgaaagaattcattgtgcatgtaaaagg |
20649127 |
T |
|
| Q |
201 |
aaatagtttggaacttactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20649126 |
aaatagtttggaacttactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatac |
20649027 |
T |
|
| Q |
301 |
attggtggtgatgat |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
20649026 |
attggtggtgatgat |
20649012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University