View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13590_high_11 (Length: 331)
Name: NF13590_high_11
Description: NF13590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13590_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 2272469 - 2272788
Alignment:
| Q |
1 |
gattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattga |
100 |
Q |
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| T |
2272469 |
gattcatgatccatcagaaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattga |
2272568 |
T |
|
| Q |
101 |
cggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagc |
200 |
Q |
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| T |
2272569 |
cggtggaaattgattcatctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagc |
2272668 |
T |
|
| Q |
201 |
agaagaatgaataatgtttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtcta |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272669 |
agaagaatgaataatgcttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtcta |
2272768 |
T |
|
| Q |
301 |
gcttttcaattggttctgtg |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
2272769 |
gcttttcaattggttctgtg |
2272788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
64 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
138 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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