View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13590_high_1_N (Length: 693)
Name: NF13590_high_1_N
Description: NF13590
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13590_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 43602795 - 43603349
Alignment:
| Q |
1 |
cctttgcagcaggatccttatgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagatctttctctg |
100 |
Q |
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| T |
43602795 |
cctttgcagcaggatccttatgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagatctttctctg |
43602894 |
T |
|
| Q |
101 |
ttcggtttgccgatccttgtaaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagcaatgtttgc |
200 |
Q |
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| T |
43602895 |
ttcggtttgccgatccttgtaaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagcaatgtttgc |
43602994 |
T |
|
| Q |
201 |
atctctttttcttcatattacttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatttgtaatata |
300 |
Q |
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| T |
43602995 |
atctctttttcttcatattacttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatttgtaatata |
43603094 |
T |
|
| Q |
301 |
agtgagaccattgcacggtggagttcaattttattgatggagaagttatgacttatggggaaattatttttcacaagggttgtaaagtttttaatttgtg |
400 |
Q |
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| T |
43603095 |
agtgagaccattgcacggtggagttcaattttattgatggagaagttatgacttatggggaaattatttttcataagggtagtaaagtttttaatttgtg |
43603194 |
T |
|
| Q |
401 |
catggggtg-------taagagttaagaagtgaagtgatgagaggttaaatgtttgatctccattct----caccataaaaactaacaatatt-aacatt |
488 |
Q |
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| T |
43603195 |
catggggtgtaagagttaagagttaagaagtgaagtgatgagaggttaaatgtttgatctccattctcacccaccataaaaactaacaatattaaacatt |
43603294 |
T |
|
| Q |
489 |
ggttgatttaaagaaagtgaatatgggtagaacgaaggttaagtggtttttcatt |
543 |
Q |
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| T |
43603295 |
ggttgatttaaagaaagtgaatatgtgtagaacgaaggttaagtggtttttcatt |
43603349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 542 - 674
Target Start/End: Original strand, 43603374 - 43603507
Alignment:
| Q |
542 |
ttgagtaatgtgcgaacc-tctgaaatatttgctcaagggttaattaccctccacttaatctatatgtatcattctgaggttgtaaacttgtaatgagat |
640 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43603374 |
ttgagtaatgtgcgaaccctctgaaatatttgctcaagggttaattaccctccacttaatctatatgtatcattctgaggttgtaaacttgtaatgagat |
43603473 |
T |
|
| Q |
641 |
aaagcacctccttgtacttttttttaacatatca |
674 |
Q |
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| T |
43603474 |
gaagcacctccttgtacttttttttaacatatca |
43603507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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